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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 61 | 2013 | Pipit: visualizing functional impacts of structural variations | Sakai, R; Moisse, M; Reumers, J; AERTS, Jan | Journal Contribution | A1 |
| 62 | 2013 | Unraveling genomic variation from next generation sequencing data | Pavlopoulos, G.A.; Oulas, A.; Iacucci, E.; Sifrim, A.; Moreau, Y.; Schneider, R.; AERTS, Jan; Iliopoulos, I. | Journal Contribution | A1 |
| 63 | 2013 | Novel Loci Associated with Increased Risk of Sudden Cardiac Death in the Context of Coronary Artery Disease | Huertas-Vazquez, A.; Nelson, C.P.; Guo, X.; Reinier, K.; Uy-Evanado, A.; Teodorescu, C.; Ayala, J.; Jerger, K.; Chugh, H.; Braund, P.S.; Deloukas, P.; Hall, A.S.; Balmforth, A.J.; Jones, M.; Taylor, K.D.; Pulit, S.L.; Newton-Cheh, C.; Gunson, K.; Jui, J.; Rotter, J.I.; Albert, C.M.; Samani, N.J.; Chugh, S.S.; AERTS, Jan; Ahmad, T.; Arbury, H.; Attwood, A.; Auton, A.; Ball, S.G.; Barnes, C.; Barrett, J.C.; Barroso, I.; Barton, A.; Bennett, A.J.; Bhaskar, S.; Blaszczyk, K.; Bowes, J.; Brand, O.J.; Bredin, F.; Breen, G.; Brown, M.J.; Bruce, I.N.; Bull, J.; Burren, O.S.; Burton, J.; Byrnes, J.; Caesar, S.; Cardin, N.; Clee, C.M.; Coffey, A.J.; Connell, J.M.C.; Conrad, D.F.; Cooper, J.D.; Dominiczak, A.F.; Downes, K.; Drummond, H.E.; Dudakia, D.; Dunham, A.; Ebbs, B.; Eccles, D.; Edkins, S.; Edwards, C.; Elliot, A.; Emery, P.; Evans, D.M.; Evans, G.; Eyre, S.; Farmer, A.; Nicol Ferrier, I.; Flynn, E.; Forbes, A.; Forty, L.; Franklyn, J.A.; Frayling, T.M.; Freathy, R.M.; Giannoulatou, E.; Gibbs, P.; Gilbert, P.; Gordon-Smith, K.; Gray, E.; Green, E.; Groves, C.J.; Grozeva, D.; Gwilliam, R.; Hall, A.; Hammond, N.; Hardy, M.; Harrison, P.; Hassanali, N.; Hebaishi, H.; Hines, S.; Hinks, A.; Hitman, G.A.; Hocking, L.; Holmes, C.; Howard, E.; Howard, P.; Howson, J.M.M.; Hughes, D.; Hunt, S.; Isaacs, J.D.; Jain, M.; Jewell, D.P.; Johnson, T.; Jolley, J.D.; Jones, I.R.; Jones, L.A.; Kirov, G.; Langford, C.F.; Lango-Allen, H.; Lathrop, G.M.; Lee, J.; Lee, K.L.; Lees, C.; Lewis, K.; Lindgren, C.M.; Maisuria-Armer, M.; Maller, J.; Mansfield, J.; Marchini, J.L.; Martin, P.; Massey, D.C.O.; McArdle, W.L.; McGuffin, P.; McLay, K.E.; McVean, G.; Mentzer, A.; Mimmack, M.L.; Morgan, A.E.; Morris, A.P.; Mowat, C.; Munroe, P.B.; Myers, S.; Newman, W.; Nimmo, E.R.; O'Donovan, M.C.; Onipinla, A.; Ovington, N.R.; Owen, M.J.; Palin, K.; Palotie, A.; Parnell, K.; Pearson, R.; Pernet, D.; Perry, J.R.B.; Phillips, A.; Plagnol, V.; Prescott, N.J.; Prokopenko, I.; Quail, M.A.; Rafelt, S.; Rayner, N.W.; Reid, D.M.; Renwick, A.; Ring, S.M.; Robertson, N.; Robson, S.; Russell, E.; St Clair, D.; Sambrook, J.G.; Sanderson, J.D.; Sawcer, S.J.; Schuilenburg, H.; Scott, C.E.; Scott, R.; Seal, S.; Shaw-Hawkins, S.; Shields, B.M.; Simmonds, M.J.; Smyth, D.J.; Somaskantharajah, E.; Spanova, K.; Steer, S.; Stephens, J.; Stevens, H.E.; Stirrups, K.; Stone, M.A.; Strachan, D.P.; Su, Z.; Symmons, D.P.M.; Thompson, J.R.; Thomson, W.; Tobin, M.D.; Travers, M.E.; Turnbull, C.; Vukcevic, D.; Wain, L.V.; Walker, M.; Walker, N.M.; Wallace, C.; Warren-Perry, M.; Watkins, N.A.; Webster, J.; Weedon, M.N.; Wilson, A.G.; Woodburn, M.; Wordsworth, B.P.; Yau, C.; Young, A.H.; Zeggini, E.; Brown, M.A.; Burton, P.R.; Caulfield, M.J.; Compston, A.; Farrall, M.; Gough, S.C.L.; Hattersley, A.T.; Hill, A.V.S.; Mathew, C.G.; Pembrey, M.; Satsangi, J.; Stratton, M.R.; Worthington, J.; Hurles, M.E.; Duncanson, A.; Ouwehand, W.H.; Parkes, M.; Rahman, N.; Todd, J.A.; Kwiatkowski, D.P.; McCarthy, M.I.; Craddock, N.; Donnelly, P. | Journal Contribution | A1 |
| 64 | 2013 | The 3rd DBCLS BioHackathon: Improving life science data integration with Semantic Web technologies | Katayama, T; Wilkinson, MD; Micklem, G; Kawashima, S; Yamaguchi, A; Nakao, M; Yamamoto, Y; Okamoto, S; Oouchida, K; Chun, HW; AERTS, Jan; Afzal, H; Antezana, E; Arakawa, K; Aranda, B; Belleau, F; Bolleman, J; Bonnal, RJP; Chapman, B; Cock, PJA; Eriksson, T; Gordon, PMK; Goto, N; Hayashi, K; Horn, H; Ishiwata, R; Kaminuma, E; Kasprzyk, A; Kawaji, H; Kido, N; Kim, YJ; Kinjo, AR; Konishi, F; Kwon, KH; Labarga, A; Lamprecht, AL; Lin, Y; Lindenbaum, P; McCarthy, L; Morita, H; Murakami, K; Nagao, K; Nishida, K; Nishimura, K; Nishizawa, T; Ogishima, S; Ono, K; Oshita, K; Park, KJ; Prins, P; Saito, TL; Samwald, M; Satagopam, VP; Shigemoto, Y; Smith, R; Splendiani, A; Sugawara, H; Taylor, J; Vos, RA; Withers, D; Yamasaki, C; Zmasek, CM; Kawamoto, S; Okubo, K; Asai, K; Takagi, T | Journal Contribution | A1 |
| 65 | 2013 | eXtasy: variant prioritization by genomic data fusion | Sifrim, A; Popovic, D; Tranchevent, LC; Ardeshirdavani, A; Sakai, R; Konings, P; Vermeesch, JR; AERTS, Jan; DE MOOR, Bart; Moreau, Y | Journal Contribution | A1 |
| 66 | 2012 | Changing computational research. The challenges ahead | Neylon, Cameron; AERTS, Jan; Brown, C Titus; Coles, Simon J; Hatton, Les; Lemire, Daniel; Millman, K Jarrod; Murray-Rust, Peter; Perez, Fernando; Saunders, Neil; Shah, Nigam; Smith, Arfon; Varoquaux, Gaël; Willighagen, Egon | Journal Contribution | A2 |
| 67 | 2012 | Visualizing High Dimensional Datasets Using Parallel Coordinates: Application to Gene Prioritization | Boogaerts, T; Tranchevent, LC; Pavlopoulos, GA; AERTS, Jan; Vandewalle, J | Proceedings Paper | C1 |
| 68 | 2012 | Arena3D: Visualizing time-driven phenotypic differences in biological systems | Secrier, M.; Pavlopoulos, G.A.; AERTS, Jan; Schneider, R. | Journal Contribution | A1 |
| 69 | 2012 | The Ruby UCSC API: Accessing the UCSC genome database using Ruby | Mishima, H.; AERTS, Jan; Katayama, T.; Bonnal, R.J.P.; Yoshiura, K.-I. | Journal Contribution | A1 |
| 70 | 2012 | An eQTL biological data visualization challenge and approaches from the visualization community | Bartlett, C.W.; Cheong, S.Y.; Hou, L.; Paquette, J.; Lum, P.Y.; Jäger, G.; Battke, F.; Vehlow, C.; Heinrich, J.; Nieselt, K.; Sakai, R.; AERTS, Jan; Ray, W.C. | Journal Contribution | A1 |
| 71 | 2012 | Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics | Bonnal, RJP; AERTS, Jan; Githinji, G; Goto, N; MacLean, D; Miller, CA; Mishima, H; Pagani, M; Ramirez-Gonzalez, R; Smant, G; Strozzi, F; Syme, R; Vos, R; Wennblom, TJ; Woodcroft, BJ; Katayama, T; Prins, P | Journal Contribution | A1 |
| 72 | 2012 | Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease | Sifrim, A; Van Houdt, JKJ; Tranchevent, LC; Nowakowska, B; Sakai, R; Pavlopoulos, GA; Devriendt, K; Vermeesch, JR; Moreau, Y; AERTS, Jan | Journal Contribution | A1 |
| 73 | 2012 | Interpretation of single nucleotide variation in human disease: a Swiss-knife approach to annotation and analysis | Sifrim, A; Van Houdt; Tranchevent; Nowakowska; Sakai; Pavlopoulos; Devriendt, K; Vermeesch, JR; Moreau, Y; AERTS, Jan | Journal Contribution | A1 |
| 74 | 2012 | Exome Sequencing and Genetic Testing for MODY | Johansson, S; Irgens, H; Chudasama, KK; Molnes, J; AERTS, Jan; Roque, FS; Jonassen, I; Levy, S; Lima, K; Knappskog, PM; Bell, GI; Molven, A; Njolstad, PR; Prokunina-Olsson, Ludmila | Journal Contribution | A1 |
| 75 | 2011 | CEP152 is a genome maintenance protein disrupted in Seckel syndrome | Kalay, E.; Yigit, G.; Aslan, Y.; Brown, K.E.; Pohl, E.; Bicknell, L.S.; Kayserili, H.; Li, Y.; Tüysüz, B.; Nürnberg, G.; Kiess, W.; Koegl, M.; Baessmann, I.; Buruk, K.; Toraman, B.; Kayipmaz, S.; Kul, S.; Ikbal, M.; Turner, D.J.; Taylor, M.S.; AERTS, Jan; Scott, C.; Milstein, K.; Dollfus, H.; Wieczorek, D.; Brunner, H.G.; Hurles, M.; Jackson, A.P.; Rauch, A.; Nürnberg, P.; Karagüzel, A.; Wollnik, B. | Journal Contribution | A1 |
| 76 | 2011 | A Ruby API to query the Ensembl database for genomic features | Strozzi, F.; AERTS, Jan | Journal Contribution | A1 |
| 77 | 2011 | Using graph theory to analyze biological networks | Pavlopoulos, G.A.; Secrier, M.; Moschopoulos, C.N.; Soldatos, T.G.; Kossida, S.; AERTS, Jan; Schneider, R.; Bagos, P.G. | Journal Contribution | A1 |
| 78 | 2011 | Medusa: A tool for exploring and clustering biological networks | Pavlopoulos, G.A.; Hooper, S.D.; Sifrim, A.; Schneider, R.; AERTS, Jan | Journal Contribution | A2 |
| 79 | 2011 | Which clustering algorithm is better for predicting protein complexes? | Moschopoulos, C.N.; Pavlopoulos, G.A.; Iacucci, E.; AERTS, Jan; Likothanassis, S.; Schneider, R.; Kossida, S. | Journal Contribution | A2 |
| 80 | 2011 | The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications | Katayama, T; Wilkinson, MD; Vos, R; Kawashima, T; Kawashima, S; Nakao, M; Yamamoto, Y; Chun, HW; Yamaguchi, A; Kawano, S; AERTS, Jan; Aoki-Kinoshita, KF; Arakawa, K; Aranda, B; Bonnal, RJP; Fernandez, JM; Fujisawa, T; Gordon, PMK; Goto, N; Haider, S; Harris, T; Hatakeyama, T; Ho, I; Itoh, M; Kasprzyk, A; Kido, N; Kim, YJ; Kinjo, AR; Konishi, F; Kovarskaya, Y; von Kuster, G; Labarga, A; Limviphuvadh, V; McCarthy, L; Nakamura, Y; Nam, Y; Nishida, K; Nishimura, K; Nishizawa, T; Ogishima, S; Oinn, T; Okamoto, S; Okuda, S; Ono, K; Oshita, K; Park, KJ; Putnam, N; Senger, M; Severin, J; Shigemoto, Y; Sugawara, H; Taylor, J; Trelles, O; Yamasaki, C; Yamashita, R; Satoh, N; Takagi, T | Journal Contribution | A1 |
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