Please use this identifier to cite or link to this item: http://hdl.handle.net/1942/37023
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dc.date.accessioned2022-03-28T11:56:07Z-
dc.date.available2022-03-28T11:56:07Z-
dc.date.issued2016-
dc.date.submitted2022-03-21T12:05:49Z-
dc.identifier.citationDryad. 10.5061/dryad.f2g0f http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f-
dc.identifier.urihttp://hdl.handle.net/1942/37023-
dc.description.abstractTo elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall–degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7–38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes.-
dc.language.isoen-
dc.publisherDryad-
dc.subject.classificationSoil ecology-
dc.subject.classificationGenomics-
dc.subject.classificationMycology-
dc.subject.otherScleroderma citrinum-
dc.subject.otherPaxillus involutus-
dc.subject.otherspecies phylogeny-
dc.subject.otherHypholoma sublateritium-
dc.subject.otherPlicaturopsis crispa-
dc.subject.otherGalerina marginata-
dc.subject.otherSebacina vermifera-
dc.subject.otherBasidiomycota-
dc.subject.otherSuillus luteus-
dc.subject.otherGymnopus luxurians-
dc.subject.otherTulasnella calospora-
dc.subject.otherAmanita thiersii-
dc.subject.otherSphaerobolus stellatus-
dc.subject.otheralignments-
dc.subject.othergene families-
dc.subject.otherPisolithus microcarpus-
dc.subject.otherAmanita muscaria-
dc.subject.otherHydnomerulius pinastri-
dc.subject.otherwood decay-
dc.subject.otherHebeloma cylindrosporum-
dc.subject.otherPiloderma croceum-
dc.subject.otherBoletales-
dc.subject.othergene phyogenies-
dc.subject.otherAgaricomycotina-
dc.subject.otherspecies phyogeny-
dc.subject.otherPaxillus rubicundulus-
dc.subject.otherPisolithus tinctorius-
dc.subject.otherAgaricales-
dc.subject.otherAmylocorticiales-
dc.titleData from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists-
dc.typeDataset-
local.bibliographicCitation.jcatDS-
dc.rights.licenseCreative Commons Zero v1.0 Universal (CC0-1.0)-
dc.identifier.doi10.5061/dryad.f2g0f-
dc.identifier.urlhttp://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f-
dc.description.otherAlignments PRANK original The file contains all the alignments generated using the online version of PRANK alignment program, prior to exclusion of poorly aligned regions AlignmentsPRANKoriginal.zip Alignments After MacClade This folder contains the alignment files for wood decay gene families after exclusion of poorly aligned regions using MacClade. AlignmentsAfterMacClade.zip RAxMLtrees the folder contains the RAxML trees generated for reconciliation of wood decay gene families Phylogenomic Datasets and Trees It includes the alignments and trees generated for the species phylogeny PhylogenomicDatasetsandTrees.zip list of proteins analyzed for organismal phylogenetic analyses Proteinfamilies_with_blast_characterization.txt Clustering_run1973_clusterMembers Gene clustering used for organismal phylogenetic analyses FilterPostProb Chronogram_R8S_PR95_smoothing5-
local.provider.typedatacite-
local.contributor.datacreatorKohler, Annegret-
local.contributor.datacreatorKuo, Alan-
local.contributor.datacreatorNagy, Laszlo G.-
local.contributor.datacreatorMorin, Emmanuelle-
local.contributor.datacreatorBarry, Kerrie W.-
local.contributor.datacreatorBuscot, Francois-
local.contributor.datacreatorCanback, Bjorn-
local.contributor.datacreatorChoi, Cindy-
local.contributor.datacreatorCichocki, Nicolas-
local.contributor.datacreatorClum, Alicia-
local.contributor.datacreatorCOLPAERT, Jan-
local.contributor.datacreatorCopeland, Alex-
local.contributor.datacreatorCosta, Mauricio D.-
local.contributor.datacreatorDore, Jeanne-
local.contributor.datacreatorFloudas, Dimitrios-
local.contributor.datacreatorGay, Gilles-
local.contributor.datacreatorGirlanda, Mariangela-
local.contributor.datacreatorHenrissat, Bernard-
local.contributor.datacreatorHerrmann, Sylvie-
local.contributor.datacreatorHess, Jaqueline-
local.contributor.datacreatorHogberg, Nils-
local.contributor.datacreatorJohansson, Tomas-
local.contributor.datacreatorKhouja, Hassine-Radhouane-
local.contributor.datacreatorLaButti, Kurt-
local.contributor.datacreatorLahrmann, Urs-
local.contributor.datacreatorLevasseur, Anthony-
local.contributor.datacreatorLindquist, Erika A.-
local.contributor.datacreatorLipzen, Anna-
local.contributor.datacreatorMarmeisse, Roland-
local.contributor.datacreatorMartino, Elena-
local.contributor.datacreatorMurat, Claude-
local.contributor.datacreatorNgan, Chew Y.-
local.contributor.datacreatorNehls, Uwe-
local.contributor.datacreatorPlett, Jonathan M.-
local.contributor.datacreatorPringle, Anne-
local.contributor.datacreatorOhm, Robin A.-
local.contributor.datacreatorPerotto, Silvia-
local.contributor.datacreatorRiley, Robert-
local.contributor.datacreatorRINEAU, Francois-
local.contributor.datacreatorSalamov, Asaf-
local.contributor.datacreatorRUYTINX, Joske-
local.contributor.datacreatorSHAH, Syyed-
local.contributor.datacreatorTarkka, Mika-
local.contributor.datacreatorSUN, Hua-
local.contributor.datacreatorTritt, Andrew-
local.contributor.datacreatorFourrey-Veneault, Claire-
local.contributor.datacreatorZuccaro, Alga-
local.contributor.datacreatorBuee, Marc-
local.contributor.datacreatorDin, Yi-
local.contributor.datacreatorGardes, Monique-
local.contributor.datacreatorGrelet, Gwen-
local.contributor.datacreatorGryta, Herve-
local.contributor.datacreatorJargeat, Patricia-
local.contributor.datacreatorZimmermann, Sabine-
local.contributor.datacreatorSitrit, Yaron-
local.contributor.datacreatorTunlid, Anders-
local.contributor.datacreatorPETERS, Martijn-
local.contributor.datacreatorGrigoriev, Igor V.-
local.contributor.datacreatorHibbett, David S.-
local.contributor.datacreatorMartin, Francis-
local.contributor.datacuratorKohler, Annegret-
local.contributor.rightsholderKohler, Annegret-
local.format.mimetypetre-
local.format.mimetypepl-
local.format.mimetypetxt-
local.format.mimetypetab-
local.format.mimetypenex-
local.contributororcid.datacurator0000-0002-9575-9567-
local.contributororcid.rightsholder0000-0002-9575-9567-
local.publication.doi10.1038/ng.3223-
dc.rights.accessOpen Access-
item.fulltextWith Fulltext-
item.accessRightsOpen Access-
item.fullcitationKohler, Annegret; Kuo, Alan; Nagy, Laszlo G.; Morin, Emmanuelle; Barry, Kerrie W.; Buscot, Francois; Canback, Bjorn; Choi, Cindy; Cichocki, Nicolas; Clum, Alicia; COLPAERT, Jan; Copeland, Alex; Costa, Mauricio D.; Dore, Jeanne; Floudas, Dimitrios; Gay, Gilles; Girlanda, Mariangela; Henrissat, Bernard; Herrmann, Sylvie; Hess, Jaqueline; Hogberg, Nils; Johansson, Tomas; Khouja, Hassine-Radhouane; LaButti, Kurt; Lahrmann, Urs; Levasseur, Anthony; Lindquist, Erika A.; Lipzen, Anna; Marmeisse, Roland; Martino, Elena; Murat, Claude; Ngan, Chew Y.; Nehls, Uwe; Plett, Jonathan M.; Pringle, Anne; Ohm, Robin A.; Perotto, Silvia; Riley, Robert; RINEAU, Francois; Salamov, Asaf; RUYTINX, Joske; SHAH, Syyed; Tarkka, Mika; SUN, Hua; Tritt, Andrew; Fourrey-Veneault, Claire; Zuccaro, Alga; Buee, Marc; Din, Yi; Gardes, Monique; Grelet, Gwen; Gryta, Herve; Jargeat, Patricia; Zimmermann, Sabine; Sitrit, Yaron; Tunlid, Anders; PETERS, Martijn; Grigoriev, Igor V.; Hibbett, David S. & Martin, Francis (2016) Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Dryad. 10.5061/dryad.f2g0f http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f.-
item.contributorKohler, Annegret-
item.contributorKuo, Alan-
item.contributorNagy, Laszlo G.-
item.contributorMorin, Emmanuelle-
item.contributorBarry, Kerrie W.-
item.contributorBuscot, Francois-
item.contributorCanback, Bjorn-
item.contributorChoi, Cindy-
item.contributorCichocki, Nicolas-
item.contributorClum, Alicia-
item.contributorCOLPAERT, Jan-
item.contributorCopeland, Alex-
item.contributorCosta, Mauricio D.-
item.contributorDore, Jeanne-
item.contributorFloudas, Dimitrios-
item.contributorGay, Gilles-
item.contributorGirlanda, Mariangela-
item.contributorHenrissat, Bernard-
item.contributorHerrmann, Sylvie-
item.contributorHess, Jaqueline-
item.contributorHogberg, Nils-
item.contributorJohansson, Tomas-
item.contributorKhouja, Hassine-Radhouane-
item.contributorLaButti, Kurt-
item.contributorLahrmann, Urs-
item.contributorLevasseur, Anthony-
item.contributorLindquist, Erika A.-
item.contributorLipzen, Anna-
item.contributorMarmeisse, Roland-
item.contributorMartino, Elena-
item.contributorMurat, Claude-
item.contributorNgan, Chew Y.-
item.contributorNehls, Uwe-
item.contributorPlett, Jonathan M.-
item.contributorPringle, Anne-
item.contributorOhm, Robin A.-
item.contributorPerotto, Silvia-
item.contributorRiley, Robert-
item.contributorRINEAU, Francois-
item.contributorSalamov, Asaf-
item.contributorRUYTINX, Joske-
item.contributorSHAH, Syyed-
item.contributorTarkka, Mika-
item.contributorSUN, Hua-
item.contributorTritt, Andrew-
item.contributorFourrey-Veneault, Claire-
item.contributorZuccaro, Alga-
item.contributorBuee, Marc-
item.contributorDin, Yi-
item.contributorGardes, Monique-
item.contributorGrelet, Gwen-
item.contributorGryta, Herve-
item.contributorJargeat, Patricia-
item.contributorZimmermann, Sabine-
item.contributorSitrit, Yaron-
item.contributorTunlid, Anders-
item.contributorPETERS, Martijn-
item.contributorGrigoriev, Igor V.-
item.contributorHibbett, David S.-
item.contributorMartin, Francis-
crisitem.discipline.code01060411-
crisitem.discipline.code01061103-
crisitem.discipline.code01060804-
crisitem.discipline.nameSoil ecology-
crisitem.discipline.nameGenomics-
crisitem.discipline.nameMycology-
crisitem.discipline.pathNatural sciences > Biological sciences > Ecology > Soil ecology-
crisitem.discipline.pathNatural sciences > Biological sciences > Systems biology > Genomics-
crisitem.discipline.pathNatural sciences > Biological sciences > Microbiology > Mycology-
crisitem.discipline.pathandcodeNatural sciences > Biological sciences > Ecology > Soil ecology (01060411)-
crisitem.discipline.pathandcodeNatural sciences > Biological sciences > Systems biology > Genomics (01061103)-
crisitem.discipline.pathandcodeNatural sciences > Biological sciences > Microbiology > Mycology (01060804)-
crisitem.license.codeCC0-1.0-
crisitem.license.nameCreative Commons Zero v1.0 Universal (CC0-1.0)-
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