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http://hdl.handle.net/1942/37023
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DC Field | Value | Language |
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dc.date.accessioned | 2022-03-28T11:56:07Z | - |
dc.date.available | 2022-03-28T11:56:07Z | - |
dc.date.issued | 2016 | - |
dc.date.submitted | 2022-03-21T12:05:49Z | - |
dc.identifier.citation | Dryad. 10.5061/dryad.f2g0f http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f | - |
dc.identifier.uri | http://hdl.handle.net/1942/37023 | - |
dc.description.abstract | To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall–degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7–38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes. | - |
dc.language.iso | en | - |
dc.publisher | Dryad | - |
dc.subject.classification | Soil ecology | - |
dc.subject.classification | Genomics | - |
dc.subject.classification | Mycology | - |
dc.subject.other | Scleroderma citrinum | - |
dc.subject.other | Paxillus involutus | - |
dc.subject.other | species phylogeny | - |
dc.subject.other | Hypholoma sublateritium | - |
dc.subject.other | Plicaturopsis crispa | - |
dc.subject.other | Galerina marginata | - |
dc.subject.other | Sebacina vermifera | - |
dc.subject.other | Basidiomycota | - |
dc.subject.other | Suillus luteus | - |
dc.subject.other | Gymnopus luxurians | - |
dc.subject.other | Tulasnella calospora | - |
dc.subject.other | Amanita thiersii | - |
dc.subject.other | Sphaerobolus stellatus | - |
dc.subject.other | alignments | - |
dc.subject.other | gene families | - |
dc.subject.other | Pisolithus microcarpus | - |
dc.subject.other | Amanita muscaria | - |
dc.subject.other | Hydnomerulius pinastri | - |
dc.subject.other | wood decay | - |
dc.subject.other | Hebeloma cylindrosporum | - |
dc.subject.other | Piloderma croceum | - |
dc.subject.other | Boletales | - |
dc.subject.other | gene phyogenies | - |
dc.subject.other | Agaricomycotina | - |
dc.subject.other | species phyogeny | - |
dc.subject.other | Paxillus rubicundulus | - |
dc.subject.other | Pisolithus tinctorius | - |
dc.subject.other | Agaricales | - |
dc.subject.other | Amylocorticiales | - |
dc.title | Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists | - |
dc.type | Dataset | - |
local.bibliographicCitation.jcat | DS | - |
dc.rights.license | Creative Commons Zero v1.0 Universal (CC0-1.0) | - |
dc.identifier.doi | 10.5061/dryad.f2g0f | - |
dc.identifier.url | http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f | - |
dc.description.other | Alignments PRANK original The file contains all the alignments generated using the online version of PRANK alignment program, prior to exclusion of poorly aligned regions AlignmentsPRANKoriginal.zip Alignments After MacClade This folder contains the alignment files for wood decay gene families after exclusion of poorly aligned regions using MacClade. AlignmentsAfterMacClade.zip RAxMLtrees the folder contains the RAxML trees generated for reconciliation of wood decay gene families Phylogenomic Datasets and Trees It includes the alignments and trees generated for the species phylogeny PhylogenomicDatasetsandTrees.zip list of proteins analyzed for organismal phylogenetic analyses Proteinfamilies_with_blast_characterization.txt Clustering_run1973_clusterMembers Gene clustering used for organismal phylogenetic analyses FilterPostProb Chronogram_R8S_PR95_smoothing5 | - |
local.provider.type | datacite | - |
local.contributor.datacreator | Kohler, Annegret | - |
local.contributor.datacreator | Kuo, Alan | - |
local.contributor.datacreator | Nagy, Laszlo G. | - |
local.contributor.datacreator | Morin, Emmanuelle | - |
local.contributor.datacreator | Barry, Kerrie W. | - |
local.contributor.datacreator | Buscot, Francois | - |
local.contributor.datacreator | Canback, Bjorn | - |
local.contributor.datacreator | Choi, Cindy | - |
local.contributor.datacreator | Cichocki, Nicolas | - |
local.contributor.datacreator | Clum, Alicia | - |
local.contributor.datacreator | COLPAERT, Jan | - |
local.contributor.datacreator | Copeland, Alex | - |
local.contributor.datacreator | Costa, Mauricio D. | - |
local.contributor.datacreator | Dore, Jeanne | - |
local.contributor.datacreator | Floudas, Dimitrios | - |
local.contributor.datacreator | Gay, Gilles | - |
local.contributor.datacreator | Girlanda, Mariangela | - |
local.contributor.datacreator | Henrissat, Bernard | - |
local.contributor.datacreator | Herrmann, Sylvie | - |
local.contributor.datacreator | Hess, Jaqueline | - |
local.contributor.datacreator | Hogberg, Nils | - |
local.contributor.datacreator | Johansson, Tomas | - |
local.contributor.datacreator | Khouja, Hassine-Radhouane | - |
local.contributor.datacreator | LaButti, Kurt | - |
local.contributor.datacreator | Lahrmann, Urs | - |
local.contributor.datacreator | Levasseur, Anthony | - |
local.contributor.datacreator | Lindquist, Erika A. | - |
local.contributor.datacreator | Lipzen, Anna | - |
local.contributor.datacreator | Marmeisse, Roland | - |
local.contributor.datacreator | Martino, Elena | - |
local.contributor.datacreator | Murat, Claude | - |
local.contributor.datacreator | Ngan, Chew Y. | - |
local.contributor.datacreator | Nehls, Uwe | - |
local.contributor.datacreator | Plett, Jonathan M. | - |
local.contributor.datacreator | Pringle, Anne | - |
local.contributor.datacreator | Ohm, Robin A. | - |
local.contributor.datacreator | Perotto, Silvia | - |
local.contributor.datacreator | Riley, Robert | - |
local.contributor.datacreator | RINEAU, Francois | - |
local.contributor.datacreator | Salamov, Asaf | - |
local.contributor.datacreator | RUYTINX, Joske | - |
local.contributor.datacreator | SHAH, Syyed | - |
local.contributor.datacreator | Tarkka, Mika | - |
local.contributor.datacreator | SUN, Hua | - |
local.contributor.datacreator | Tritt, Andrew | - |
local.contributor.datacreator | Fourrey-Veneault, Claire | - |
local.contributor.datacreator | Zuccaro, Alga | - |
local.contributor.datacreator | Buee, Marc | - |
local.contributor.datacreator | Din, Yi | - |
local.contributor.datacreator | Gardes, Monique | - |
local.contributor.datacreator | Grelet, Gwen | - |
local.contributor.datacreator | Gryta, Herve | - |
local.contributor.datacreator | Jargeat, Patricia | - |
local.contributor.datacreator | Zimmermann, Sabine | - |
local.contributor.datacreator | Sitrit, Yaron | - |
local.contributor.datacreator | Tunlid, Anders | - |
local.contributor.datacreator | PETERS, Martijn | - |
local.contributor.datacreator | Grigoriev, Igor V. | - |
local.contributor.datacreator | Hibbett, David S. | - |
local.contributor.datacreator | Martin, Francis | - |
local.contributor.datacurator | Kohler, Annegret | - |
local.contributor.rightsholder | Kohler, Annegret | - |
local.format.mimetype | tre | - |
local.format.mimetype | pl | - |
local.format.mimetype | txt | - |
local.format.mimetype | tab | - |
local.format.mimetype | nex | - |
local.contributororcid.datacurator | 0000-0002-9575-9567 | - |
local.contributororcid.rightsholder | 0000-0002-9575-9567 | - |
local.publication.doi | 10.1038/ng.3223 | - |
dc.rights.access | Open Access | - |
item.fulltext | With Fulltext | - |
item.accessRights | Open Access | - |
item.fullcitation | Kohler, Annegret; Kuo, Alan; Nagy, Laszlo G.; Morin, Emmanuelle; Barry, Kerrie W.; Buscot, Francois; Canback, Bjorn; Choi, Cindy; Cichocki, Nicolas; Clum, Alicia; COLPAERT, Jan; Copeland, Alex; Costa, Mauricio D.; Dore, Jeanne; Floudas, Dimitrios; Gay, Gilles; Girlanda, Mariangela; Henrissat, Bernard; Herrmann, Sylvie; Hess, Jaqueline; Hogberg, Nils; Johansson, Tomas; Khouja, Hassine-Radhouane; LaButti, Kurt; Lahrmann, Urs; Levasseur, Anthony; Lindquist, Erika A.; Lipzen, Anna; Marmeisse, Roland; Martino, Elena; Murat, Claude; Ngan, Chew Y.; Nehls, Uwe; Plett, Jonathan M.; Pringle, Anne; Ohm, Robin A.; Perotto, Silvia; Riley, Robert; RINEAU, Francois; Salamov, Asaf; RUYTINX, Joske; SHAH, Syyed; Tarkka, Mika; SUN, Hua; Tritt, Andrew; Fourrey-Veneault, Claire; Zuccaro, Alga; Buee, Marc; Din, Yi; Gardes, Monique; Grelet, Gwen; Gryta, Herve; Jargeat, Patricia; Zimmermann, Sabine; Sitrit, Yaron; Tunlid, Anders; PETERS, Martijn; Grigoriev, Igor V.; Hibbett, David S. & Martin, Francis (2016) Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Dryad. 10.5061/dryad.f2g0f http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f. | - |
item.contributor | Kohler, Annegret | - |
item.contributor | Kuo, Alan | - |
item.contributor | Nagy, Laszlo G. | - |
item.contributor | Morin, Emmanuelle | - |
item.contributor | Barry, Kerrie W. | - |
item.contributor | Buscot, Francois | - |
item.contributor | Canback, Bjorn | - |
item.contributor | Choi, Cindy | - |
item.contributor | Cichocki, Nicolas | - |
item.contributor | Clum, Alicia | - |
item.contributor | COLPAERT, Jan | - |
item.contributor | Copeland, Alex | - |
item.contributor | Costa, Mauricio D. | - |
item.contributor | Dore, Jeanne | - |
item.contributor | Floudas, Dimitrios | - |
item.contributor | Gay, Gilles | - |
item.contributor | Girlanda, Mariangela | - |
item.contributor | Henrissat, Bernard | - |
item.contributor | Herrmann, Sylvie | - |
item.contributor | Hess, Jaqueline | - |
item.contributor | Hogberg, Nils | - |
item.contributor | Johansson, Tomas | - |
item.contributor | Khouja, Hassine-Radhouane | - |
item.contributor | LaButti, Kurt | - |
item.contributor | Lahrmann, Urs | - |
item.contributor | Levasseur, Anthony | - |
item.contributor | Lindquist, Erika A. | - |
item.contributor | Lipzen, Anna | - |
item.contributor | Marmeisse, Roland | - |
item.contributor | Martino, Elena | - |
item.contributor | Murat, Claude | - |
item.contributor | Ngan, Chew Y. | - |
item.contributor | Nehls, Uwe | - |
item.contributor | Plett, Jonathan M. | - |
item.contributor | Pringle, Anne | - |
item.contributor | Ohm, Robin A. | - |
item.contributor | Perotto, Silvia | - |
item.contributor | Riley, Robert | - |
item.contributor | RINEAU, Francois | - |
item.contributor | Salamov, Asaf | - |
item.contributor | RUYTINX, Joske | - |
item.contributor | SHAH, Syyed | - |
item.contributor | Tarkka, Mika | - |
item.contributor | SUN, Hua | - |
item.contributor | Tritt, Andrew | - |
item.contributor | Fourrey-Veneault, Claire | - |
item.contributor | Zuccaro, Alga | - |
item.contributor | Buee, Marc | - |
item.contributor | Din, Yi | - |
item.contributor | Gardes, Monique | - |
item.contributor | Grelet, Gwen | - |
item.contributor | Gryta, Herve | - |
item.contributor | Jargeat, Patricia | - |
item.contributor | Zimmermann, Sabine | - |
item.contributor | Sitrit, Yaron | - |
item.contributor | Tunlid, Anders | - |
item.contributor | PETERS, Martijn | - |
item.contributor | Grigoriev, Igor V. | - |
item.contributor | Hibbett, David S. | - |
item.contributor | Martin, Francis | - |
crisitem.discipline.code | 01060411 | - |
crisitem.discipline.code | 01061103 | - |
crisitem.discipline.code | 01060804 | - |
crisitem.discipline.name | Soil ecology | - |
crisitem.discipline.name | Genomics | - |
crisitem.discipline.name | Mycology | - |
crisitem.discipline.path | Natural sciences > Biological sciences > Ecology > Soil ecology | - |
crisitem.discipline.path | Natural sciences > Biological sciences > Systems biology > Genomics | - |
crisitem.discipline.path | Natural sciences > Biological sciences > Microbiology > Mycology | - |
crisitem.discipline.pathandcode | Natural sciences > Biological sciences > Ecology > Soil ecology (01060411) | - |
crisitem.discipline.pathandcode | Natural sciences > Biological sciences > Systems biology > Genomics (01061103) | - |
crisitem.discipline.pathandcode | Natural sciences > Biological sciences > Microbiology > Mycology (01060804) | - |
crisitem.license.code | CC0-1.0 | - |
crisitem.license.name | Creative Commons Zero v1.0 Universal (CC0-1.0) | - |
Appears in Collections: | Datasets |
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doi_10.5061_dryad.f2g0f__v1.zip | 8.47 MB | Unknown | View/Open |
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