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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 1 | 2009 | Structural variation in Great Ape genomes | AERTS, Jan; Tyler-Smith, Chris | Book Section | B2 |
| 2 | 2009 | Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds | Gibbs, R.A.; Taylor, J.F.; Van Tassell, C.P.; Barendse, W.; Eversole, K.A.; Gill, C.A.; Green, R.D.; Hamernik, D.L.; Kappes, S.M.; Lien, S.; Matukumalli, L.K.; McEwan, J.C.; Nazareth, L.V.; Schnabel, R.D.; Weinstock, G.M.; Wheeler, D.A.; Ajmone-Marsan, P.; Barends, W.; Boettcher, P.J.; Caetano, A.R.; Garcia, J.F.; OlivierHanotte; Mariani, P.; Skow, L.C.; Sonstegard, T.S.; Williams, J.L.; Diallo, B.; Hailemariam, L.; Hanotte, O.; Martinez, M.L.; Morris, C.A.; Silva, L.O.C.; Spelman, R.J.; Mulatu, W.; Zhao, K.; Abbey, C.A.; Agaba, M.; Araujo, F.R.; Bunch, R.J.; Burton, J.; Gorni, C.; Harrison, B.E.; Luff, B.; Machado, M.A.; Mwakaya, J.; Plastow, G.; Sim, W.; Smith, T.; Thomas, M.B.; Valentini, A.; Williams, P.; Womack, J.; Woolliams, J.A.; Liu, Y.; Qin, X.; Worley, K.C.; Gao, C.; Jiang, H.; Moore, S.S.; Ren, Y.; Song, X.-Z.; Bustamante, C.D.; Hernandez, R.D.; Muzny, D.M.; Patil, S.; Lucas, A.S.; Fu, Q.; Kent, M.P.; Vega, R.; Matukumalli, A.; McWilliam, S.; Sclep, G.; Bryc, K.; Choi, J.; Gao, H.; Grefenstette, J.J.; Murdoch, B.; Stella, A.; Villa-Angulo, R.; Wright, M.; AERTS, Jan; Jann, O.; Negrini, R.; Goddard, M.E.; Hayes, B.J.; Bradley, D.G.; Da Silva, M.B.; Lau, L.P.L.; Liu, G.E.; Lynn, D.J.; Panzitta, F.; Dodds, K.G. | Journal Contribution | A1 |
| 3 | 2009 | The genome sequence of taurine cattle: A window to ruminant biology and evolution | Elsik, C.G.; Tellam, R.L.; Worley, K.C.; Gibbs, R.A.; Muzny, D.M.; Weinstock, G.M.; Adelson, D.L.; Eichler, E.E.; Elnitski, L.; Guigó, R.; Hamernik, D.L.; Kappes, S.M.; Lewin, H.A.; Lynn, D.J.; Nicholas, F.W.; Reymond, A.; Rijnkels, M.; Skow, L.C.; Zdobnov, E.M.; Schook, L.; Womack, J.; Alioto, T.; Antonarakis, S.E.; Astashyn, A.; Chappie, C.E.; Chen, H.-C.; Chrast, J.; Câmara, F.; Ermolaeva, O.; Henrichsen, C.N.; Hlavina, W.; Kapustin, Y.; Kiryutin, B.; Kitts, P.; Kokocinski, F.; Landrum, M.; Maglott, D.; Pruitt, K.; Sapojnikov, V.; Searle, S.M.; Solovyev, V.; Souvorov, A.; Ucla, C.; Wyss, C.; Anzola, J.M.; Gerlach, D.; Elhaik, E.; Graur, D.; Reese, J.T.; Edgar, R.C.; McEwan, J.C.; Payne, G.M.; Raison, J.M.; Junier, T.; Kriventseva, E.V.; Eyras, E.; Plass, M.; Donthu, R.; Larkin, D.M.; Reecy, J.; Yang, M.Q.; Chen, L.; Cheng, Z.; Chitko-McKown, C.G.; Liu, G.E.; Matukumalli, L.K.; Song, J.; Zhu, B.; Bradley, D.G.; Brinkman, F.S.L.; Lau, L.P.L.; Whiteside, M.D.; Walker, A.; Wheeler, T.T.; Casey, T.; German, J.B.; Lemay, D.G.; Maqbool, N.J.; Molenaar, A.J.; Seo, S.; Stothard, P.; Baldwin, C.L.; Baxter, R.; Brinkmeyer-Larigford, C.L.; Brown, W.C.; Childers, C.P.; Connelley, T.; Ellis, S.A.; Fritz, K.; Glass, E.J.; Herzig, C.T.A.; Livanainen, A.; Lahmers, K.K.; Bennett, A.K.; Dickens, C.M.; Gilbert, J.G.R.; Hagen, D.E.; Salih, H.; AERTS, Jan; Caetano, A.R.; Dalrymple, B.; Garcia, J.F.; Gill, C.A.; Hiendleder, S.G.; Memili, E.; Spurlock, D.; Williams, J.L.; Alexander, L.; Brownstein, M.J.; Guan, L.; Holt, R.A.; Jones, S.J.M.; Marra, M.A.; Moore, R.; Moore, S.S.; Roberts, A.; Taniguchi, M.; Waterman, R.C.; Chacko, J.; Chandrabose, M.M.; Cree, A.; Dao, M.D.; Dinh, H.H.; Gabisi, R.A.; Hines, S.; Hume, J.; Jhangiani, S.N.; Joshi, V.; Kovar, C.L.; Lewis, L.R.; Liu, Y.-S.; Lopez, J.; Morgan, M.B.; Nguyen, N.B.; Okwuonu, G.O.; Ruiz, S.J.; Santibanez, J.; Wright, R.A.; Buhay, C.; Ding, Y.; Dugan-Rocha, S.; Herdandez, J.; Holder, M.; Sabo, A.; Egan, A.; Goodell, J.; Wilczek-Boney, K.; Fowler, G.R.; Hitchens, M.E.; Lozado, R.J.; Moen, C.; Steffen, D.; Warren, J.T.; Zhang, J.; Chiu, R.; Schein, J.E.; Durbin, K.J.; Havlak, P.; Jiang, H.; Qin, X.; Ren, Y.; Liu, Y.; Shen, Y.; Song, H.; Bell, S.N.; Davis, C.; Johnson, A.J.; Lee, S.; Nazareth, L.V.; Patel, B.M.; Pu, L.-L.; Vattathil, S.; Williams Jr., R.L.; Curry, S.; Hamilton, C.; Sodergren, E.; Wheeler, D.A.; Barris, W.; Bennett, G.L.; Eggen, A.; Green, R.D.; Harhay, G.P.; Hobbs, M.; Jann, O.; Keele, J.W.; Kent, M.P.; Lien, S.; McKay, S.D.; McWilliam, S.; Ratnakumar, A.; Schnabel, R.D.; Smith, T.; Snelling, W.M.; Sonstegard, T.S.; Stone, R.T.; Sugimoto, Y.; Takasuga, A.; Taylor, J.F.; Van Tassell, C.P.; MacNeil, M.D.; Abatepaulo, A.R.R.; Abbey, C.A.; Ahola, V.; Almeida, L.G.; Amadio, A.F.; Anatriello, E.; Bahadue, S.M.; Biase, F.H.; Boldt, C.R.; Carroll, J.A.; Carvalho, W.A.; Cervelatti, E.P.; Chacko, E.; Chapin, J.E.; Cheng, Y.; Choi, J.; Colley, A.J.; DeCampos, T.A.; De Donato, M.; De Miranda Santos, I.K.F.; De Oliveira, C.J.F.; Deobald, H.; Devinoy, E.; Donohue, K.E.; Dove, P.; Eberlein, A.; Fitzsimmons, C.J.; Franzin, A.M.; Garcia, G.R.; Genini, S.; Gladney, C.J.; Grant, J.R.; Greaser, M.L.; Green, J.A.; Hadsell, D.L.; Hakimov, H.A.; Halgren, R.; Harrow, J.L.; Hart, E.A.; Hastings, N.; Hernandez, M.; Hu, Z.-L.; Iivanainen, A.; Ingham, A.; Iso-Touru, T.; Jamis, C.; Jensen, K.; Kapetis, D.; Kerr, T.; Khalil, S.S.; Khatib, H.; Kolbehdari, D.; Kumar, C.G.; Kumar, D.; Leach, R.; Lee, J.C.-M.; Li, C.; Logan, K.M.; Malinverni, R.; Marques, E.; Martin, W.F.; Martins, N.F.; Maruyama, S.R.; Mazza, R.; McLean, K.L.; Medrano, J.F.; Moreno, B.T.; More, D.D.; Muntean, C.T.; Nandakumar, H.P.; Nogueira, M.F.G.; Olsaker, I.; Pant, S.D.; Panzitta, F.; Pastor, R.C.P.; Poli, M.A.; Poslusny, N.; Rachagani, S.; Ranganathan, S.; Razpet, A.; Riggs, P.K.; Rincón, G.; Rodriguez-Osorio, N.; Rodriguez-Zas, S.L.; Romero, N.E.; Rosenwald, A.; Sando, L.; Schmutz, S.M.; Shen, L.; Sherman, L.; Southey, B.R.; Lutzow, Y.S.; Sweedler, J.V.; Tammen, I.; Telugu, B.P.V.L.; Urbanski, J.M.; Utsunomiya, Y.T.; Verschoor, C.P.; Waardenberg, A.J.; Wang, Z.; Ward, R.; WeiKard, R.; Welsh Jr., T.H.; White, S.N.; Wilming, L.G.; Wunderlich, K.R.; Yang, J.; Zhao, F.-Q. | Journal Contribution | A1 |
| 4 | 2009 | An introduction to scripting in Ruby for biologists | AERTS, Jan; Law, A. | Journal Contribution | A1 |
| 5 | 2009 | Genomic analysis reveals extensive gene duplication within the bovine TRB locus | Connelley, T.; AERTS, Jan; Law, A.; Ivan, W.I. | Journal Contribution | A1 |
| 6 | 2008 | An assessment of population structure in eight breeds of cattle using a whole genome SNP panel | McKay, S.D.; Schnabel, R.D.; Murdoch, B.M.; Matukumalli, L.K.; AERTS, Jan; Coppieters, W.; Crews, D.; Neto, E.D.; Gill, C.A.; Gao, C.; Mannen, H.; Wang, Z.; Van Tassell, C.P.; Williams, J.L.; Taylor, J.F.; Moore, S.S. | Journal Contribution | A1 |
| 7 | 2008 | Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project | Taylor, C.F.; Field, D.; Sansone, S.-A.; AERTS, Jan; Apweiler, R.; Ashburner, M.; Ball, C.A.; Binz, P.-A.; Bogue, M.; Booth, T.; Brazma, A.; Brinkman, R.R.; Michael Clark, A.; Deutsch, E.W.; Fiehn, O.; Fostel, J.; Ghazal, P.; Gibson, F.; Gray, T.; Grimes, G.; Hancock, J.M.; Hardy, N.W.; Hermjakob, H.; Julian Jr., R.K.; Kane, M.; Kettner, C.; Kinsinger, C.; Kolker, E.; Kuiper, M.; Novère, N.L.; Leebens-Mack, J.; Lewis, S.E.; Lord, P.; Mallon, A.-M.; Marthandan, N.; Masuya, H.; McNally, R.; Mehrle, A.; Morrison, N.; Orchard, S.; Quackenbush, J.; Reecy, J.M.; Robertson, D.G.; Rocca-Serra, P.; Rodriguez, H.; Rosenfelder, H.; Santoyo-Lopez, J.; Scheuermann, R.H.; Schober, D.; Smith, B.; Snape, J.; Stoeckert Jr., C.J.; Tipton, K.; Sterk, P.; Untergasser, A.; Vandesompele, J.; Wiemann, S. | Journal Contribution | A1 |
| 8 | 2007 | Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping | McKay, S.D.; Schnabel, R.D.; Murdoch, B.M.; AERTS, Jan; Gill, C.A.; Li, C.; Gao, C.; Matukumalli, L.K.; Stothard, P.; Wang, Z.; Van Tassell, C.P.; Williams, J.L.; Taylor, J.F.; Moore, S.S. | Journal Contribution | A1 |
| 9 | 2007 | Whole genome linkage disequilibrium maps in cattle | McKay, S.D.; Schnabel, R.D.; Murdoch, B.M.; Matukumalli, L.K.; AERTS, Jan; Coppieters, W.; Crews, D.; Neto, E.; Gill, C.A.; Gao, C.; Mannen, H.; Stothard, P.; Wang, Z.; Van Tassell, C.P.; Williams, J.L.; Taylor, J.F.; Moore, S.S. | Journal Contribution | A1 |
| 10 | 2007 | Extent of linkage disequilibrium in chicken | AERTS, Jan; Megens, H.J.; Veenendaal, T.; Ovcharenko, I.; Crooijmans, R.; Gordon, L.; Stubbs, L.; Groenen, M. | Journal Contribution | A1 |
| 11 | 2007 | A physical map of the bovine genome | Snelling, W.M.; CHIU, Roland; Schein, J.E.; Hobbs, M.; Abbey, C.A.; Adelson, D.L.; AERTS, Jan; Bennett, G.L.; Bosdet, I.E.; Boussaha, M.; Brauning, R.; Caetano, A.R.; Costa, M.M.; Crawford, A.M.; Dalrymple, B.P.; Eggen, A.; Everts-van der Wind, A.; Floriot, S.; Gautier, M.; Gill, C.A.; Green, R.D.; Holt, R.; Jann, O.; Jones, S.J.M.; Kappes, S.M.; Keele, J.W.; de Jong, P.J.; Larkin, D.M.; Lewin, H.A.; McEwan, J.C.; McKay, S.; Marra, M.A.; Mathewson, C.A.; Matukumalli, L.K.; Moore, S.S.; Murdoch, B.; Nicholas, F.W.; Osoegawa, K.; Roy, A.; Salih, H.; Schibler, L.; Schnabel, R.D.; Silveri, L.; Skow, L.C.; Smith, T.P.L.; Sonstegard, T.S.; Taylor, J.F.; Tellam, R.; Van Tassell, C.P.; Williams, J.L.; Womack, J.E.; Wye, N.H.; Yang, G.; Zhao, S. | Journal Contribution | A1 |
| 12 | 2006 | A second generation radiation hybrid map to aid the assembly of the bovine genome sequence | Jann, O.C.; AERTS, Jan; Jones, M.; Hastings, N.; Law, A.; McKay, S.; Marques, E.; Prasad, A.; Yu, J.; Moore, S.; Floriot, S.; Mahé, M.-F.; Eggen, A.; Silveri, L.; Negrini, R.; Milanesi, E.; Ajmone-Marsan, P.; Valentini, A.; Marchitelli, C.; Savarese, M.C.; Janitz, M.; Herwig, R.; Hennig, S.; Gorni, C.; Connor, E.E.; Sonstegard, T.S.; Smith, T.; Drögemüller, C.; Williams, J.L. | Journal Contribution | A1 |
| 13 | 2005 | MIPE - a XML format to facilitate the storage an exchange of PCR_relateds data | AERTS, Jan; Veenendaal, T | Journal Contribution | A2 |
| 14 | 2005 | Chromosomal assignment of chicken clone contigs by extending the consensus linkage map | AERTS, Jan; Veenendaal, T.; Van Der Poel, J.J.; Crooijmans, R.P.M.A.; Groenen, M.A.M. | Journal Contribution | A1 |
| 15 | 2004 | A physical map of the chicken genome | Wallis, JW; AERTS, Jan; Groenen, MAM; Crooijmans, RPMA; Layman, D; Graves, TA; Scheer, DE; Kremitzki, C; Fedele, MJ; Mudd, NK; Cardenas, M; Higginbotham, J; Carter, J; McGrane, R; Gaige, T; Mead, K; Walker, J; Albracht, D; Davito, J; Yang, SP; Leong, S; Chinwalla, A; Sekhon, M; Wylie, K; Dodgson, J; Romanov, MN; Cheng, H; de Jong, PJ; Osoegawa, K; Nefedov, M; Zhang, HB; McPherson, JD; Krzywinski, M; Schein, J; Hillier, L; Mardis, ER; Wilson, RK; Warren, WC | Journal Contribution | A1 |
| 16 | 2004 | Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution | Hillier, LW; Miller, W; Birney, E; Warren, W; Hardison, RC; Ponting, CP; Bork, P; Burt, DW; Groenen, MAM; Delany, ME; Dodgson, JB; Chinwalla, AT; Cliften, PF; Clifton, SW; Delehaunty, KD; Fronick, C; Fulton, RS; Graves, TA; Kremitzki, C; Layman, D; Magrini, V; McPherson, JD; Miner, TL; Minx, P; Nash, WE; Nhan, MN; Nelson, JO; Oddy, LG; Pohl, CS; Randall-Maher, J; Smith, SM; Wallis, JW; Yang, SP; Romanov, MN; Rondelli, CM; Paton, B; Smith, J; Morrice, D; Daniels, L; Tempest, HG; Robertson, L; Masabanda, JS; Griffin, DK; Vignal, A; Fillon, V; Jacobbson, L; Kerje, S; Andersson, L; Crooijmans, RPM; AERTS, Jan; van der Poel, JJ; Ellegren, H; Caldwell, RB; Hubbard, SJ; Grafham, DV; Kierzek, AM; McLaren, SR; Overton, IM; Arakawa, H; Beattie, KJ; Bezzubov, Y; Boardman, PE; Bonfield, JK; Croning, MDR; Davies, RM; Francis, MD; Humphray, SJ; Scott, CE; Taylor, RG; Tickle, C; Brown, WRA; Rogers, J; Buerstedde, JM; Wilson, SA; Stubbs, L; Ovcharenko, I; Gordon, L; Lucas , S; Miller, MM; Inoko, H; Shiina, T; Kaufman, J; Salomonsen, J; Skjoedt, K; Wong, GKS; Wang, J; Liu , B; Yu, J; Yang, HM; Nefedov, M; Koriabine, M; deJong , PJ; Goodstadt, L; Webber, C; Dickens, NJ; Letunic, I; Suyama, M; Torrents, D; von Mering, C; Zdobnov, EM; Makova, K; Nekrutenko, A; Elnitski, L; Eswara, P; King, DC; Yang , S; Tyekucheva, S; Radakrishnan, A; Harris, RS; Chiaromonte, F; Taylor, J; He, JB; Rijnkels, M; Griffiths-Jones, S; Ureta-Vidal, A; Hoffman, MM; Severin, J; Searle, SMJ; Law, AS; Speed, D; Waddington, D; Cheng , Z; Tuzun, E; Eichler, E; Bao , ZR; Flicek, P; Shteynberg, DD; Brent, MR; Bye, JM; Huckle, EJ; Chatterji, S; Dewey, C; Pachter, L; Kouranov, A; Mourelatos, Z; Hatzigeorgiou, AG; Paterson, AH; Ivarie, R; Brandstrom, M; Axelsson, E; Backstrom, N; Berlin, S; Webster, MT; Pourquie, O; Reymond, A; Ucla, C; Antonarakis, SE; Long, MY; Emerson, JJ; Betran, E; Dupanloup, I; Kaessmann, H; Hinrichs, AS; Bejerano, G; Furey, TS; Harte, RA; Raney, B; Siepel, A; Kent, WJ; Haussler, D; Eyras, E; Castelo, R; Abril, JF; Castellano, S; Camara, F; Parra, G; Guigo, R; Bourque, G; Tesler, G; Pevzner, PA; Smit , A; Fulton, LA; Mardis, ER; Wilson , RK | Journal Contribution | A1 |
| 17 | 2004 | POSA: Perl objects for DNA sequencing data analysis | AERTS, Jan; Jungerius, BJ; Groenen, MA | Journal Contribution | A1 |
| 18 | 2003 | Integration of chicken genomic resources to enable whole-genome sequencing | AERTS, Jan; Crooijmans, R; Cornelissen, S; Hemmatian, K; Veenendaal, T; Jaadar, A; van der Poel, J; Fillon, V; Vignal, A; Groenen, M | Journal Contribution | A1 |
| 19 | 2002 | Data mining of public SNP databases for the selection of intragenic SNPs | AERTS, Jan; Wetzels, Y; Cohen, N; Aerssens, J | Journal Contribution | A1 |
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