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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 1 | 2024 | Neutralise: An open science initiative for neutral comparison of two-sample tests | KODALCI, Leyla; THAS, Olivier | Journal Contribution | A1 |
| 2 | 2024 | Benchmarking digital PCR partition classification methods with empirical and simulated duplex data | Chen, Yao; De Spiegelaere, Ward; Trypsteen, Wim; Gleerup, David; Vandesompele, Jo; Lievens, Antoon; Vynck, Matthijs; THAS, Olivier | Journal Contribution | A1 |
| 3 | 2024 | Synergy detection: A practical guide to statistical assessment of potential drug combinations | Makariadou, Elli; Wang , Xuechen; Hein, Nicholas; DERESA, Negera Wakgari; Mutambanengwe, Kathy; Verbist, Bie; THAS, Olivier | Journal Contribution | A1 |
| 4 | 2023 | SEMIPARAMETRIC ESTIMATION OF PROBABILISTIC INDEX MODELS: EFFICIENCY AND BIAS | Vermeulen, Karel; De Neve , Jan; Amorim, Gustavo; THAS, Olivier; Vansteelandt, Stijn | Journal Contribution | A1 |
| 5 | 2023 | Digital PCR Partition Classification | Vynck, Matthijs; Chen, Yao; Gleerup, David; Vandesompele, Jo; Trypsteen, Wim; Lievens, Antoon; THAS, Olivier; De Spiegelaere, Ward | Journal Contribution | A1 |
| 6 | 2023 | Measuring DNA quality by digital PCR using probability calculations | Gleerup, David; Chen, Yao; Van Snippenberg, Willem; Valcke, Cedric; THAS, Olivier; Trypsteen, Wim; De Spiegelaere, Ward | Journal Contribution | A1 |
| 7 | 2023 | Simple and flexible sign and rank-based methods for testing for differential abundance in microbiome studies | KODALCI, Leyla; THAS, Olivier; Lingling, An | Journal Contribution | A1 |
| 8 | 2023 | Determining Tipping Points and Responses of Macroinvertebrate Traits to Abiotic Factors in Support of River Management | Forio, Marie Anne Eurie; Goethals, Peter L. M.; Lock, Koen; Nguyen, Thi Hanh Tien; Damanik-Ambarita, Minar Naomi; Dominguez-Granda, Luis; THAS, Olivier | Journal Contribution | A1 |
| 9 | 2023 | Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision | Vromman, Marieke; Anckaert, Jasper; Bortoluzzi, Stefania; Buratin, Alessia; Chen , Chia-Ying; Chu, Qinjie; Chuang, Trees-Juen; Dehghannasiri, Roozbeh; Dieterich, Christoph; Dong, Xin; Flicek, Paul; Gaffo, Enrico; Gu, Wanjun; He, Chunjiang; Hoffmann, Steve; Izuogu, Osagie; Jackson, Michael S.; Jakobi, Tobias; Lai, Eric C.; Nuytens, Justine; Salzman, Julia; Santibanez-Koref, Mauro; THAS, Olivier; Stadler, Peter; Eynde, Eveline Vanden; Verniers, Kimberly; Wen, Guoxia; Westholm, Jakub; Yang, Li; Ye, Chu-Yu; Yigit, Nurten; Yuan, Guo-Hua; Zhang, Jinyang; Zhao, Fangqing; Vandesompele, Jo; VOLDERS, Pieter-Jan | Journal Contribution | A1 |
| 10 | 2023 | Generalized pairwise comparisons for censored data: An overview | DELTUVAITE-THOMAS, Vaiva; VERBEECK, Johan; BURZYKOWSKI, Tomasz; BUYSE, Marc; Tournigand, Christophe; MOLENBERGHS, Geert; THAS, Olivier | Journal Contribution | A1 |
| 11 | 2022 | Smooth tests of goodness of fit for the distributional assumption of regression models | Rayner, J. C. W.; Rippon, Paul; Suesse, Thomas; THAS, Olivier | Journal Contribution | A1 |
| 12 | 2022 | Individual reference intervals for personalised interpretation of clinical and metabolomics measurements | PUSPARUM, Murih; Ertaylan, Gokhan; THAS, Olivier | Journal Contribution | A1 |
| 13 | 2022 | Statistical detection of synergy: New methods and a comparative study | THAS, Olivier; Tourny, Annelies; Verbist, Bie; Hawinkel, Stijn; Nazarov, Maxim; Mutambanengwe, Kathy; BIJNENS, Luc | Journal Contribution | A1 |
| 14 | 2021 | Development of a 3’:5’ digital PCR assay to determine horse mRNA integrity | Du Cheyne, Charis; Chen, Yao; De Craene, Jurgen; THAS, Olivier; De Spiegelaere, Ward | Journal Contribution | A1 |
| 15 | 2021 | Seasonal Variation in Prevalence of Mycoplasma hyopneumoniae and Other Respiratory Pathogens in Peri-Weaned, Post-Weaned, and Fattening Pigs with Clinical Signs of Respiratory Diseases in Belgian and Dutch Pig Herds, Using a Tracheobronchial Swab Sampling Technique, and Their Associations with Local Weather Conditions | Vangroenweghe, Frederic A. C. J.; THAS, Olivier | Journal Contribution | A1 |
| 16 | 2021 | Supplementation of a β-mannanase enzyme reduces post-weaning diarrhea and antibiotic use in piglets on an alternative diet with additional soybean meal | Vangroenweghe, Frederic; Poulsen, Karl; THAS, Olivier | Journal Contribution | A1 |
| 17 | 2021 | Towards Building a Quantitative Proteomics Toolbox in Precision Medicine: A Mini-Review | CORREA ROJO, Alejandro; HEYLEN, Dries; AERTS, Jan; THAS, Olivier; HOOYBERGHS, Jef; Ertaylan, Gokhan; VALKENBORG, Dirk | Journal Contribution | A1 |
| 18 | 2021 | Exploring the Microbiome Analysis and Visualization Landscape | PEETERS, Jannes; THAS, Olivier; SHKEDY, Ziv; KODALCI, Leyla; MUSISI, Connie; OWOKOTOMO, Olajumoke Evangelina; DYCZKO, Aleksandra; HAMAD, Ibrahim; VANGRONSVELD, Jaco; KLEINEWIETFELD, Markus; THIJS, Sofie; AERTS, Jan | Journal Contribution | A1 |
| 19 | 2021 | Graduate Education in Statistics and Data Science: The Why, When, Where, Who, and What | AERTS, Marc; MOLENBERGHS, Geert; THAS, Olivier | Journal Contribution | A1 |
| 20 | 2020 | From Population to Subject-Specific Reference Intervals | PUSPARUM, Murih; Ertaylan, Gökhan; THAS, Olivier | Proceedings Paper | C1 |
| 21 | 2020 | SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data | Assefa, Alemu Takele; Vandesompele, Jo; THAS, Olivier | Journal Contribution | A1 |
| 22 | 2020 | Sequence count data are poorly fit by the negative binomial distribution | Hawinkel, Stijn; Rayner, J. C. W.; BIJNENS, Luc; THAS, Olivier | Journal Contribution | A1 |
| 23 | 2020 | On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experiments | Assefa, Alemu Takele; Vandesompele, Jo; THAS, Olivier | Journal Contribution | A1 |
| 24 | 2020 | Model-based joint visualization of multiple compositional omics datasets | Hawinkel, Stijn; BIJNENS, Luc; Le Cao, Kim-Anh; THAS, Olivier | Journal Contribution | A1 |
| 25 | 2020 | Evaluation of a zinc chelate on clinical swine dysentery under field conditions | Vangroenweghe, Frederic; Allais, Liesbeth; Van Driessche, Ellen; van Berkel, Robbert; Lammers, Gerwen; THAS, Olivier | Journal Contribution | A1 |
| 26 | 2020 | SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups | Everaert, Celine; Volders, Pieter-Jan; Morlion, Annelien; THAS, Olivier; Mestdagh, Pieter | Journal Contribution | A1 |
| 27 | 2020 | Unbiasedness and efficiency of non-parametric and UMVUE estimators of the probabilistic index and related statistics | VERBEECK, Johan; DELTUVAITE-THOMAS, Vaiva; BERCKMOES, Ben; BURZYKOWSKI, Tomasz; AERTS, Marc; THAS, Olivier; BUYSE, Marc; MOLENBERGHS, Geert | Journal Contribution | A1 |
| 28 | 2019 | SPECS : a non-parameteric method to identify tissue-specific molecular features for unbalanced sample groups | Everaert, Celine; Volders, Pieter-Jan; Morlion, Annelien; THAS, Olivier; Mestdagh, Pieter | Preprint | O |
| 29 | 2019 | Probabilistic index models for testing differential gene expression in single-cell RNA sequencing data | Assefa, Alemu Takele; Vandesompele, Jo; THAS, Olivier | Conference Material | C2 |
| 30 | 2019 | Clinical diseases in pet black-tailed prairie dogs (Cynomys ludovicianus): a retrospective study in 206 animals | Thas, I.; Wagner, R.A.; THAS, Olivier | Journal Contribution | A1 |
| 31 | 2019 | Semiparametric linear transformation models: Effect measures, estimators, and applications | De Neve, Jan; THAS, Olivier; Gerds, Thomas A. | Journal Contribution | A1 |
| 32 | 2019 | A unified framework for unconstrained and constrained ordination of microbiome read count data | Hawinkel, Stijn; Kerckhof, Frederiek-Maarten; BIJNENS, Luc; THAS, Olivier | Journal Contribution | A1 |
| 33 | 2019 | High-dimensional prediction of binary outcomes in the presence of between-study heterogeneity | Mbah, Chamberlain; De Neve, Jan; THAS, Olivier | Journal Contribution | A1 |
| 34 | 2019 | A broken promise: microbiome differential abundance methods do not control the false discovery rate | Hawinkel, Stijn; Mattiello, Federico; BIJNENS, Luc; THAS, Olivier | Journal Contribution | A1 |
| 35 | 2019 | A Practical Protocol for the Experimental Design of Comparative Studies on Water Treatment | Ho, Long; THAS, Olivier; Van Echelpoel, Wout; Goethals, Peter | Journal Contribution | A1 |
| 36 | 2018 | Reducing bias in digital PCR experiments by appropriate modelling of volume variability | Vynck, Matthijs; THAS, Olivier | Conference Material | C2 |
| 37 | 2018 | Microbial transplant to shift a malodorous armpit microbiome | Callewaert, Chris; Kerckhof, Frederiek-Maarten; Van Keer, Thomas; Meunier, Murielle; Plaquet, Tess; Hawinkel, Stijn; Aerts, Maarten; Vandamme, Peter; Hernandez Sanabria, Emma; Sanders, Jon; Washburne, Alex; Vilchez Vargas, Ramiro; Jauregui, Ruy; Pieper, Dietmar H.; Bostoen, Jessica; Lambert, Jo; Knight, Rob; Verhofstadt, Lesley; THAS, Olivier; Van de Wiele, Tom; Boon, Nico | Proceedings Paper | C2 |
| 38 | 2018 | Probabilistic index models for testing differential gene expression in single-cell RNA-sequencing data | Takele Assefa, Alemu; Vandesompele, Jo; THAS, Olivier | Conference Material | C2 |
| 39 | 2018 | Differential gene expression analysis of RNA-sequencing data : evaluation of DGE tools for long non-coding RNA-sequencing data | Takele Assefa, Alemu; Vandesompele, Jo; THAS, Olivier | Conference Material | C2 |
| 40 | 2018 | Reducing bias in digital PCR experiments by appropriate modelling of volume variability | Vynck, Matthijs; THAS, Olivier | Journal Contribution | A1 |
| 41 | 2018 | Quantifying the uncertainty of a model-reconstructed soilscape for archaeological land evaluation | Finke, PA; Jafari, A; Zwertvaegher, A; THAS, Olivier | Journal Contribution | A1 |
| 42 | 2018 | Small sample inference for probabilistic index models | Amorim, G.; THAS, Olivier; Vermeulen, K.; Vansteelandt, S.; De Neve, J. | Journal Contribution | A1 |
| 43 | 2018 | A new approach for modeling patient overall radiosensitivity and predicting multiple toxicity endpoints for breast cancer patients | Mbah, Chamberlain; De Ruyck, Kim; De Schrijver, Silke; De Sutter, Charlotte; Schiettecatte, Kimberly; Monten, Chris; Paelinck, Leen; De Neve, Wilfried; Thierens, Hubert; West, Chatarine; Amorim, Gustavo; THAS, Olivier; Veldeman, Liv | Journal Contribution | A1 |
| 44 | 2018 | Prognostic and therapeutic implications of circulating androgen receptor gene copy number in prostate cancer patients using droplet digital polymerase chain reaction | Buelens, Sarah; Claeys, Tom; Dhondt, Bert; Poelaert, Filip; Vynck, Matthijs; Yigit, Nurten; THAS, Olivier; Ost, Piet; Vandesompele, Jo; Lumen, Nicolaas; Kumps, Candy | Journal Contribution | A1 |
| 45 | 2018 | Model-based analysis of the relationship between macroinvertebrate traits and environmental river conditions | Forio, Marie Anne Eurie; Goethals, Peter L. M.; Lock, Koen; Asio, Victor; Bande, Marlito; THAS, Olivier | Journal Contribution | A1 |
| 46 | 2018 | Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data | Assefa, AT; De Paepe, K; Everaert, C; Mestdagh, P; THAS, Olivier; Vandesompele, J | Journal Contribution | A1 |
| 47 | 2018 | Use of trachea-bronchial swab qPCR testing to confirm Mycoplasma hyopneumoniae seropositivity in an SPF breeding herd | Vangroenweghe, Frédéric; Willems, Eveline; Malasek, Jiri; THAS, Olivier; Maes, Dominiek | Journal Contribution | A1 |
| 48 | 2018 | Confirmation of Mycoplasma hyopneumoniae in a breeding herd through tracheobronchial swab sampling and PCR | Vangroenweghe, Frédéric and Willems, Eveline and Thas, Olivier and Maes, Dominiek; Vangroenweghe, Frédéric; Willems, Eveline; THAS, Olivier; Maes, Dominiek | Journal Contribution | A1 |
| 49 | 2018 | A comprehensive overview of genomic imprinting in breast and its deregulation in cancer | Goovaerts, Tine; Steyaert, Sandra; Vandenbussche, Chari A.; Galle, Jeroen; THAS, Olivier; Van Criekinge, Wim; De Meyer, Tim | Journal Contribution | A1 |
| 50 | 2018 | Statistically-Based Comparison of the Removal Efficiencies and Resilience Capacities between Conventional and Natural Wastewater Treatment Systems: A Peak Load Scenario | Ho, Long; Van Echelpoel, Wout; Charalambous, Panayiotis; Gordillo, Ana P. L.; THAS, Olivier; Goethals, Peter | Journal Contribution | A1 |
| 51 | 2018 | Model-based analysis of increased loads on the performance of activated sludge and waste stabilization ponds | Ho, Long; Pompeu, Cassia; Van Echelpoel, Wout; THAS, Olivier; Goethals, Peter | Journal Contribution | A1 |
| 52 | 2018 | On determining the power of digital PCR experiments | Vynck, Matthijs; Vandesompele, Jo; THAS, Olivier | Journal Contribution | A1 |
| 53 | 2018 | A Closer Look on Spatiotemporal Variations of Dissolved Oxygen in Waste Stabilization Ponds Using Mixed Models | Ho, Long; Duy Tan Pham; Van Echelpoel, Wout; MUCHENE, Leacky; SHKEDY, Ziv; Alvarado, Andres; Espinoza-Palacios, Juan; Arevalo-Durazno, Maria; THAS, Olivier; Goethals, Peter | Journal Contribution | A1 |
| 54 | 2015 | Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project | Verbist, Bie; Klambauer, Günter; Vervoort, Liesbet; TALLOEN, Willem; SHKEDY, Ziv; THAS, Olivier; Bender, Andreas; Göhlmann, Hinrich W. H.; Hochreiter, Sepp; BIGIRUMURAME, Theophile | Journal Contribution | A1 |
| 55 | 2012 | Flow cytometry for fast microbial community fingerprinting | De Roy, Karen; CLEMENT, Lieven; THAS, Olivier; Wang, Yingying; Boon, Nico | Journal Contribution | A1 |
| 56 | 2012 | Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model | De Beuf, Kristof; De Schrijver, Joachim; THAS, Olivier; Van Criekinge, Wim; Irizarry, Rafael A.; CLEMENT, Lieven | Journal Contribution | A1 |
| 57 | 2012 | Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling) | De Beuf, Kristof; Pipelers, Peter; Andriankaja, Megan; THAS, Olivier; Inze, Dirk; Crainiceanu, Ciprian; CLEMENT, Lieven | Journal Contribution | A1 |
| 58 | 2012 | An Omnibus Consistent Adaptive Percentile Modified Wilcoxon Rank Sum Test with Applications in Gene Expression Studies | THAS, Olivier; CLEMENT, Lieven; Rayner, John C. W.; Carvalho, Beatriz; Van Criekinge, Wim | Journal Contribution | A1 |
| 59 | 2012 | Fast Wavelet Based Functional Models for Transcriptome Analysis with Tiling Arrays | CLEMENT, Lieven; De Beuf, Kristof; THAS, Olivier; Vuylsteke, Marnik; Irizarry, Rafael A.; Crainiceanu, Ciprian M. | Journal Contribution | A1 |
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