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http://hdl.handle.net/1942/15378
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DC Field | Value | Language |
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dc.contributor.author | Forcheh, Anyiawung Chiara | - |
dc.contributor.author | VERBEKE, Geert | - |
dc.contributor.author | KASIM, Adetayo | - |
dc.contributor.author | LIN, Dan | - |
dc.contributor.author | SHKEDY, Ziv | - |
dc.contributor.author | TALLOEN, Willem | - |
dc.contributor.author | Goehlmann, Hinrich W. H. | - |
dc.contributor.author | CLEMENT, Lieven | - |
dc.date.accessioned | 2013-08-14T14:05:04Z | - |
dc.date.available | 2013-08-14T14:05:04Z | - |
dc.date.issued | 2013 | - |
dc.identifier.citation | R JOURNAL, 5 (1), p. 171-180 | - |
dc.identifier.issn | 2073-4859 | - |
dc.identifier.uri | http://hdl.handle.net/1942/15378 | - |
dc.description.abstract | Microarrays enable the expression levels of thousands of genes to be measured simultaneously. However, only a small fraction of these genes are expected to be expressed under different experimental conditions. Nowadays, filtering has been introduced as a step in the microarray preprocessing pipeline. Gene filtering aims at reducing the dimensionality of data by filtering redundant features prior to the actual statistical analysis. Previous filtering methods focus on the Affymetrix platform and can not be easily ported to the Illumina platform. As such, we developed a filtering method for Illumina bead arrays. We developed an R package, beadarrayFilter, to implement the latter method. In this paper, the main functions in the package are highlighted and using many examples, we illustrate how beadarrayFilter can be used to filter bead arrays. | - |
dc.description.sponsorship | We acknowledge the support from IAP research network grant nr. P6/03 of the Belgian government (Belgian Science Policy), SymBioSys, the Katholieke Universiteit Leuven center of Excellence on Computational Systems Biology, (EF/05/007), and Bioframe of the institute for the Promotion of Innovation by Science and technology in Flanders (IWT: 060045/KUL-BIO-M$S-PLANT). | - |
dc.language.iso | en | - |
dc.publisher | R FOUNDATION STATISTICAL COMPUTING | - |
dc.subject.other | Computer Science, Interdisciplinary Applications; Statistics & Probability | - |
dc.title | beadarrayFilter: An R Package to Filter Beads | - |
dc.type | Journal Contribution | - |
dc.identifier.epage | 180 | - |
dc.identifier.issue | 1 | - |
dc.identifier.spage | 171 | - |
dc.identifier.volume | 5 | - |
local.format.pages | 10 | - |
local.bibliographicCitation.jcat | A1 | - |
dc.description.notes | [Forcheh, Anyiawung Chiara; Verbeke, Geert; Clement, Lieven] Katholieke Univ Leuven, Interuniv Inst Biostat & Stat Bioinformat, B-3000 Louvain, Belgium. [Forcheh, Anyiawung Chiara; Verbeke, Geert; Clement, Lieven] Univ Hasselt, B-3590 Diepenbeek, Belgium. [Lin, Dan; Shkedy, Ziv] Univ Hasselt, Interuniv Inst Biostat & Stat Bioinformat, B-3590 Diepenbeek, Belgium. [Lin, Dan; Shkedy, Ziv] Katholieke Univ Leuven, B-3000 Louvain, Belgium. [Kasim, Adetayo] Univ Durham, Wolfson Res Inst, Thornaby TS17 6BH, Stockton On Tee, England. [Talloen, Willem; Goehlmann, Hinrich W. H.] Janssen Pharmaceut NV, Beerse, Belgium. forcheh@yahoo.com; Geert.Verbeke@med.kuleuven.be; a.s.kasim@durham.ac.uk; dan.lin2@pfizer.com; ziv.shkedy@uhasselt.be; wtalloen@its.jnj.com; hinrich@goehlmann.info; lieven.clement@med.kuleuven.be | - |
local.publisher.place | WIEN | - |
local.type.refereed | Refereed | - |
local.type.specified | Article | - |
dc.identifier.isi | 000321944400017 | - |
item.fulltext | With Fulltext | - |
item.contributor | Forcheh, Anyiawung Chiara | - |
item.contributor | VERBEKE, Geert | - |
item.contributor | KASIM, Adetayo | - |
item.contributor | LIN, Dan | - |
item.contributor | SHKEDY, Ziv | - |
item.contributor | TALLOEN, Willem | - |
item.contributor | Goehlmann, Hinrich W. H. | - |
item.contributor | CLEMENT, Lieven | - |
item.accessRights | Open Access | - |
item.fullcitation | Forcheh, Anyiawung Chiara; VERBEKE, Geert; KASIM, Adetayo; LIN, Dan; SHKEDY, Ziv; TALLOEN, Willem; Goehlmann, Hinrich W. H. & CLEMENT, Lieven (2013) beadarrayFilter: An R Package to Filter Beads. In: R JOURNAL, 5 (1), p. 171-180. | - |
item.validation | ecoom 2014 | - |
crisitem.journal.issn | 2073-4859 | - |
Appears in Collections: | Research publications |
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