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http://hdl.handle.net/1942/18756
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DC Field | Value | Language |
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dc.contributor.author | Bittremieux, Wout | - |
dc.contributor.author | Kelchtermans, Pieter | - |
dc.contributor.author | VALKENBORG, Dirk | - |
dc.contributor.author | Martens, Lennart | - |
dc.contributor.author | Laukens, Kris | - |
dc.date.accessioned | 2015-04-23T07:17:22Z | - |
dc.date.available | 2015-04-23T07:17:22Z | - |
dc.date.issued | 2014 | - |
dc.identifier.citation | JOURNAL OF PROTEOME RESEARCH, 13 (7), p. 3484-3487 | - |
dc.identifier.issn | 1535-3893 | - |
dc.identifier.uri | http://hdl.handle.net/1942/18756 | - |
dc.description.abstract | The awareness that systematic quality control is an essential factor to enable the growth of proteomics into a mature analytical discipline has increased over the past few years. To this aim, a controlled vocabulary and document structure have recently been proposed by Walzer et al. to store and disseminate quality-control metrics for mass-spectrometry-based proteomics experiments, called qcML. To facilitate the adoption of this standardized quality control routine, we introduce jqcML, a Java application programming interface (API) for the qcML data format. First, jqcML provides a complete object model to represent qcML data. Second, jqcML provides the ability to read, write, and work in a uniform manner with qcML data from different sources, including the XML-based qcML file format and the relational database qcDB. Interaction with the XML-based file format is obtained through the Java Architecture for XML Binding (JAXB), while generic database functionality is obtained by the Java Persistence API (JPA). jqcML is released as open-source software under the permissive Apache 2.0 license and can be downloaded from https://bitbucket.org/proteinspector/jqcml. | - |
dc.description.sponsorship | This work was supported by SBO grant "InSPECtor" (120025) of the Flemish agency for Innovation by Science and Technology (IWT). | - |
dc.language.iso | en | - |
dc.publisher | AMER CHEMICAL SOC | - |
dc.rights | © 2014 American Chemical Society. | - |
dc.subject.other | mass spectrometry; proteomics; quality control; qcML; Java; API; open source; XML; qcDB; database | - |
dc.subject.other | mass spectrometry; proteomics; quality control; qcML; Java; API; open source; XML; qcDB; database | - |
dc.title | jqcML: An Open-Source Java API for Mass Spectrometry Quality Control Data in the qcML Format | - |
dc.type | Journal Contribution | - |
dc.identifier.epage | 3487 | - |
dc.identifier.issue | 7 | - |
dc.identifier.spage | 3484 | - |
dc.identifier.volume | 13 | - |
local.format.pages | 4 | - |
local.bibliographicCitation.jcat | A1 | - |
dc.description.notes | [Bittremieux, Wout; Laukens, Kris] Univ Antwerp, Dept Math & Comp Sci, B-2020 Antwerp, Belgium. [Bittremieux, Wout; Laukens, Kris] Univ Antwerp, Biomed Informat Res Ctr Antwerp Biomina, Univ Antwerp Hosp, B-2650 Antwerp, Belgium. [Kelchtermans, Pieter; Martens, Lennart] VIB, Dept Med Prot Res, B-9000 Ghent, Belgium. [Kelchtermans, Pieter; Martens, Lennart] Univ Ghent, Dept Biochem, Fac Med & Hlth Sci, B-9000 Ghent, Belgium. [Kelchtermans, Pieter; Vakenborg, Dirk] Flemish Inst Technol Res VITO, B-2400 Mol, Belgium. [Vakenborg, Dirk] Univ Antwerp, CFP CeProMa, B-2020 Antwerp, Belgium. [Vakenborg, Dirk] Hasselt Univ, I BioStat, B-3590 Diepenbeek, Belgium. | - |
local.publisher.place | WASHINGTON | - |
local.type.refereed | Refereed | - |
local.type.specified | Article | - |
dc.identifier.doi | 10.1021/pr401274z | - |
dc.identifier.isi | 000338693400032 | - |
item.accessRights | Restricted Access | - |
item.contributor | Bittremieux, Wout | - |
item.contributor | Kelchtermans, Pieter | - |
item.contributor | VALKENBORG, Dirk | - |
item.contributor | Martens, Lennart | - |
item.contributor | Laukens, Kris | - |
item.fullcitation | Bittremieux, Wout; Kelchtermans, Pieter; VALKENBORG, Dirk; Martens, Lennart & Laukens, Kris (2014) jqcML: An Open-Source Java API for Mass Spectrometry Quality Control Data in the qcML Format. In: JOURNAL OF PROTEOME RESEARCH, 13 (7), p. 3484-3487. | - |
item.fulltext | With Fulltext | - |
item.validation | ecoom 2015 | - |
crisitem.journal.issn | 1535-3893 | - |
crisitem.journal.eissn | 1535-3907 | - |
Appears in Collections: | Research publications |
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bittremieux 1.pdf Restricted Access | Published version | 288.17 kB | Adobe PDF | View/Open Request a copy |
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