Please use this identifier to cite or link to this item: http://hdl.handle.net/1942/33088
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dc.contributor.authorPingarilho, Marta-
dc.contributor.authorPimentel, Victor-
dc.contributor.authorDiogo, Isabel-
dc.contributor.authorFernandes, Sandra-
dc.contributor.authorMiranda, Mafalda-
dc.contributor.authorPineda-Pena, Andrea-
dc.contributor.authorLIBIN, Pieter-
dc.contributor.authorTheys, Kristof-
dc.contributor.authorO. Martins, M. Rosario-
dc.contributor.authorVandamme, Anne-Mieke-
dc.contributor.authorCamacho, Ricardo-
dc.contributor.authorGomes, Perpetua-
dc.contributor.authorAbecasis, Ana-
dc.date.accessioned2021-01-14T09:36:46Z-
dc.date.available2021-01-14T09:36:46Z-
dc.date.issued2020-
dc.date.submitted2021-01-12T11:11:36Z-
dc.identifier.citationViruses-Basel, 12 (11) (Art N° 1238)-
dc.identifier.urihttp://hdl.handle.net/1942/33088-
dc.description.abstractIntroduction: Treatment for All recommendations have allowed access to antiretroviral (ARV) treatment for an increasing number of patients. This minimizes the transmission of infection but can potentiate the risk of transmitted (TDR) and acquired drug resistance (ADR). Objective: To study the trends of TDR and ADR in patients followed up in Portuguese hospitals between 2001 and 2017. Methods: In total, 11,911 patients of the Portuguese REGA database were included. TDR was defined as the presence of one or more surveillance drug resistance mutation according to the WHO surveillance list. Genotypic resistance to ARV was evaluated with Stanford HIVdb v7.0. Patterns of TDR, ADR and the prevalence of mutations over time were analyzed using logistic regression. Results and Discussion: The prevalence of TDR increased from 7.9% in 2003 to 13.1% in 2017 (p < 0.001). This was due to a significant increase in both resistance to nucleotide reverse transcriptase inhibitors (NRTIs) and non-nucleotide reverse transcriptase inhibitors (NNRTIs), from 5.6% to 6.7% (p = 0.002) and 2.9% to 8.9% (p < 0.001), respectively. TDR was associated with infection with subtype B, and with lower viral load levels (p < 0.05). The prevalence of ADR declined from 86.6% in 2001 to 51.0% in 2017 (p < 0.001), caused by decreasing drug resistance to all antiretroviral (ARV) classes (p < 0.001). Conclusions: While ADR has been decreasing since 2001, TDR has been increasing, reaching a value of 13.1% by the end of 2017. It is urgently necessary to develop public health programs to monitor the levels and patterns of TDR in newly diagnosed patients.-
dc.description.sponsorshipFunding: This study was supported by European Funds through grant Bio-Molecular and Epidemiological Surveillance of HIV Transmitted Drug Resistance, Hepatitis Co-Infections and Ongoing Transmission Patterns in Europe-BEST HOPE-(project funded through HIVERA: Harmonizing Integrating Vitalizing European Research on HIV/Aids, grant 249697); by FCT for funds to GHTM-UID/Multi/04413/2013 and GHTM-UID/04413/2020; by the MigrantHIV project (financed by FCT: PTDC/DTP-EPI/7066/2014); by Gilead Génese HIVLatePresenters and by Characterization of drug-resistance TB and HIV, and associated socio-behavioral factors among migrants in Lisbon, Portugal project financed by GHTM-UID/Multi/04413/2013. Pieter Libin was supported by a PhD grant of the FWO (Fonds Wetenschappelijk Onderzoek - Vlaanderen). Acknowledgments: We would like to thank the patients and all the members of the Portuguese HIV-1 Resistance Study Group: Fátima Gonçalves, Joaquim Cabanas, Ana Patrícia Carvalho, Inês Costa from Laboratório de Biologia Molecular (LMCBM, SPC, CHLO-HEM), 1349-019 Lisboa Portugal; Kamal Mansinho, Ana Cláudia Miranda, Isabel Aldir, Fernando Ventura, Jaime Nina, Fernando Borges from Serviço de Doenças Infeciosas, Centro Hospitalar de Lisboa Ocidental, Hospital de Egas Moniz, Lisboa, Portugal; Emília Valadas, Manuela Doroana, Francisco Antunes from Serviço de Infeciologia, Hospital de Santa Maria, Centro Hospitalar de Lisboa Norte, Lisboa, Portugal; Nuno Marques, Maria João Aleixo, Maria João Águas, Júlio Botas from Serviço de Infeciologia, Hospital Garcia da Orta, Almada, Portugal; Teresa Branco, Patrícia Pacheco, Luís Duque from Serviço de Infeciologia, Hospital Fernando da Fonseca, Amadora, Portugal; José Vera, Luís Tavares from Serviço de Medicina Interna, Centro Hospitalar do Barreiro-Montijo, Portugal; Inês Vaz Pinto from Unidade funcional VIH/SIDA, Hospital de Cascais, Cascais, Portugal; José Poças, Joana Sá from Serviço de Infeciologia, Centro Hospitalar de Setúbal, Setúbal, Portugal; António Diniz, Margarida Serrado, Ana Mineiro from Serviço de Pneumologia, Hospital Pulido Valente, Centro Hospitalar de Lisboa Norte, Lisboa, Portugal; Flora Gomes, Cristina Guerreiro from Serviço de Obstetrícia - Maternidade Alfredo da Costa, Centro Hospitalar de Lisboa Central, Lisboa, Portugal; Carlos Santos, Domitília Faria, Paula Fonseca from Serviço de Medicina Interna-Centro Hospitalar do Algarve, Hospital de Portimão, Portimão, Portugal; Paula Proença from Serviço de Infeciologia-Centro Hospitalar do Algarve, Hospital de Faro, Faro, Portugal; Telo Faria from Unidade Local de Saúde do Baixo Alentejo, Hospital José Joaquim Fernandes, Viruses 2020, 12, 1238 13 of 15 Beja, Portugal; Eugénio Teófilo, Sofia Pinheiro from Serviço de Infeciologia, Hospital de Santo António dos Capuchos, Centro Hospitalar de Lisboa Central, Lisboa, Portugal; Isabel Germano, Umbelina Caixas, Margarida Bentes Jesus from Serviço de Medicina 1.4, Centro Hospitalar de Lisboa Central, Hospital de São José, Lisboa, Portugal; Nancy Faria, Ana Paula Reis from Serviço de Doenças Infectocontagiosas, Hospital Central do Funchal, Madeira, Portugal; Graça Amaro, Fausto Roxo from Serviço de Doenças Infeciosas, Hospital Distrital de Santarém, Santarém, Portugal; Ricardo Abreu and Isabel Neves from Serviço de Infeciologia, Unidade de Local de Saúde de Matosinhos, Hospital Pedro Hispano, Matosinhos, Portugal. This study was supported by European Funds through grant Bio-Molecular and Epidemiological Surveillance of HIV Transmitted Drug Resistance, Hepatitis Co-Infections and Ongoing Transmission Patterns in Europe-BEST HOPE-(project funded through HIVERA: Harmonizing Integrating Vitalizing European Research on HIV/Aids, grant 249697); by FCT for funds to GHTM-UID/Multi/04413/2013 and GHTM-UID/04413/2020; by the MigrantHIV project (financed by FCT: PTDC/DTP-EPI/7066/2014); by Gilead Genese HIVLatePresenters and by Characterization of drug-resistance TB and HIV, and associated socio-behavioral factors among migrants in Lisbon, Portugal project financed by GHTM-UID/Multi/04413/2013. Pieter Libin was supported by a PhD grant of the FWO (FondsWetenschappelijk Onderzoek -Vlaanderen).-
dc.language.isoen-
dc.publisherMDPI-
dc.rights2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).-
dc.subject.otherHIV-1-
dc.subject.othertransmitted drug resistance-
dc.subject.otheracquired drug resistance-
dc.subject.otherPortugal-
dc.titleIncreasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations-
dc.typeJournal Contribution-
dc.identifier.issue11-
dc.identifier.volume12-
local.format.pages15-
local.bibliographicCitation.jcatA1-
dc.description.notesPingarilho, M (corresponding author), Univ Nova Lisboa IHMT UNL, Inst Higiene & Med Trop, Global Hlth & Trop Med GHTM, P-1349028 Lisbon, Portugal.-
dc.description.notesmartapingarilho@ihmt.unl.pt; victor.pimentel@ihmt.unl.pt;-
dc.description.notesifmadeira@chlo.min-saude.pt; smfernandes@chlo.min-saude.pt;-
dc.description.notesa21000919@ihmt.unl.pt; andreapinedap@gmail.com; pieter.libin@vub.ac.be;-
dc.description.noteskristof.theys@kuleuven.be; mrfom@ihmt.unl.pt;-
dc.description.notesannemie.vandamme@kuleuven.be; ricardojorge.camacho@kuleuven.be;-
dc.description.notesgomes.perpetua@gmail.com; ana.abecasis@ihmt.unl.pt-
dc.description.otherPingarilho, M (corresponding author), Univ Nova Lisboa IHMT UNL, Inst Higiene & Med Trop, Global Hlth & Trop Med GHTM, P-1349028 Lisbon, Portugal. martapingarilho@ihmt.unl.pt; victor.pimentel@ihmt.unl.pt; ifmadeira@chlo.min-saude.pt; smfernandes@chlo.min-saude.pt; a21000919@ihmt.unl.pt; andreapinedap@gmail.com; pieter.libin@vub.ac.be; kristof.theys@kuleuven.be; mrfom@ihmt.unl.pt; annemie.vandamme@kuleuven.be; ricardojorge.camacho@kuleuven.be; gomes.perpetua@gmail.com; ana.abecasis@ihmt.unl.pt-
local.publisher.placeST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND-
local.type.refereedRefereed-
local.type.specifiedArticle-
local.bibliographicCitation.artnr1238-
dc.identifier.doi10.3390/v12111238-
dc.identifier.isiWOS:000594359900001-
dc.contributor.orcidMiranda, Mafalda/0000-0002-7184-1240; Oliveira Martins, Maria do-
dc.contributor.orcidRosario/0000-0002-7941-0285; Vandamme, Anne-Mieke/0000-0002-6594-2766;-
dc.contributor.orcidTheys, Kristof/0000-0003-0242-7000-
local.provider.typewosris-
local.uhasselt.uhpubyes-
local.description.affiliation[Pingarilho, Marta; Pimentel, Victor; Miranda, Mafalda; Pineda-Pena, Andrea; O. Martins, M. Rosario; Vandamme, Anne-Mieke; Abecasis, Ana] Univ Nova Lisboa IHMT UNL, Inst Higiene & Med Trop, Global Hlth & Trop Med GHTM, P-1349028 Lisbon, Portugal.-
local.description.affiliation[Diogo, Isabel; Fernandes, Sandra; Gomes, Perpetua] CHLO HEM, SPC, LMCBM, Lab Biol Mol, P-1349019 Lisbon, Portugal.-
local.description.affiliation[Libin, Pieter; Theys, Kristof; Vandamme, Anne-Mieke; Camacho, Ricardo] Katholieke Univ Leuven, Dept Microbiol & Immunol, Rega Inst Med Res, Clin & Epidemiol Virol, B-3000 Leuven, Belgium.-
local.description.affiliation[Libin, Pieter] Vrije Univ Brussel, Dept Comp Sci, Artificial Intelligence Lab, B-1000 Brussels, Belgium.-
local.description.affiliation[Libin, Pieter] Hasselt Univ, Data Sci Inst, Interuniv Inst Biostat & Stat Bioinformat, B-3500 Hasselt, Belgium.-
local.description.affiliation[Gomes, Perpetua] Inst Super Ciencias Saude Egas Moniz, Ctr Invest Interdisciplinar Egas Moniz CiiEM, P-2829511 Caparica, Portugal.-
local.uhasselt.internationalyes-
item.fullcitationPingarilho, Marta; Pimentel, Victor; Diogo, Isabel; Fernandes, Sandra; Miranda, Mafalda; Pineda-Pena, Andrea; LIBIN, Pieter; Theys, Kristof; O. Martins, M. Rosario; Vandamme, Anne-Mieke; Camacho, Ricardo; Gomes, Perpetua & Abecasis, Ana (2020) Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations. In: Viruses-Basel, 12 (11) (Art N° 1238).-
item.accessRightsOpen Access-
item.fulltextWith Fulltext-
item.contributorPingarilho, Marta-
item.contributorPimentel, Victor-
item.contributorDiogo, Isabel-
item.contributorFernandes, Sandra-
item.contributorMiranda, Mafalda-
item.contributorPineda-Pena, Andrea-
item.contributorLIBIN, Pieter-
item.contributorTheys, Kristof-
item.contributorO. Martins, M. Rosario-
item.contributorVandamme, Anne-Mieke-
item.contributorCamacho, Ricardo-
item.contributorGomes, Perpetua-
item.contributorAbecasis, Ana-
item.validationecoom 2021-
crisitem.journal.eissn1999-4915-
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