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http://hdl.handle.net/1942/37023
Title: | Data from: Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists | Data Creator - person: | Kohler, Annegret Kuo, Alan Nagy, Laszlo G. Morin, Emmanuelle Barry, Kerrie W. Buscot, Francois Canback, Bjorn Choi, Cindy Cichocki, Nicolas Clum, Alicia COLPAERT, Jan Copeland, Alex Costa, Mauricio D. Dore, Jeanne Floudas, Dimitrios Gay, Gilles Girlanda, Mariangela Henrissat, Bernard Herrmann, Sylvie Hess, Jaqueline Hogberg, Nils Johansson, Tomas Khouja, Hassine-Radhouane LaButti, Kurt Lahrmann, Urs Levasseur, Anthony Lindquist, Erika A. Lipzen, Anna Marmeisse, Roland Martino, Elena Murat, Claude Ngan, Chew Y. Nehls, Uwe Plett, Jonathan M. Pringle, Anne Ohm, Robin A. Perotto, Silvia Riley, Robert RINEAU, Francois Salamov, Asaf RUYTINX, Joske SHAH, Syyed Tarkka, Mika SUN, Hua Tritt, Andrew Fourrey-Veneault, Claire Zuccaro, Alga Buee, Marc Din, Yi Gardes, Monique Grelet, Gwen Gryta, Herve Jargeat, Patricia Zimmermann, Sabine Sitrit, Yaron Tunlid, Anders PETERS, Martijn Grigoriev, Igor V. Hibbett, David S. Martin, Francis |
Data Curator - person: | Kohler, Annegret | Rights Holder - person: | Kohler, Annegret | Publisher: | Dryad | Issue Date: | 2016 | Abstract: | To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species, and five saprotrophs, which we analyzed along with other fungal genomes. Ectomycorrhizal fungi have a reduced complement of genes encoding plant cell wall–degrading enzymes (PCWDEs), as compared to their ancestral wood decayers. Nevertheless, they have retained a unique array of PCWDEs, thus suggesting that they possess diverse abilities to decompose lignocellulose. Similar functional categories of nonorthologous genes are induced in symbiosis. Of induced genes, 7–38% are orphan genes, including genes that encode secreted effector-like proteins. Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of mycorrhiza-induced genes. | Research Discipline: | Natural sciences > Biological sciences > Ecology > Soil ecology (01060411) Natural sciences > Biological sciences > Systems biology > Genomics (01061103) Natural sciences > Biological sciences > Microbiology > Mycology (01060804) |
Keywords: | Scleroderma citrinum;Paxillus involutus;species phylogeny;Hypholoma sublateritium;Plicaturopsis crispa;Galerina marginata;Sebacina vermifera;Basidiomycota;Suillus luteus;Gymnopus luxurians;Tulasnella calospora;Amanita thiersii;Sphaerobolus stellatus;alignments;gene families;Pisolithus microcarpus;Amanita muscaria;Hydnomerulius pinastri;wood decay;Hebeloma cylindrosporum;Piloderma croceum;Boletales;gene phyogenies;Agaricomycotina;species phyogeny;Paxillus rubicundulus;Pisolithus tinctorius;Agaricales;Amylocorticiales | DOI: | 10.5061/dryad.f2g0f | Link to publication/dataset: | http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f | Source: | Dryad. 10.5061/dryad.f2g0f http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2g0f | Publications related to the dataset: | 10.1038/ng.3223 | License: | Creative Commons Zero v1.0 Universal (CC0-1.0) | Access Rights: | Open Access | Category: | DS | Type: | Dataset |
Appears in Collections: | Datasets |
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doi_10.5061_dryad.f2g0f__v1.zip | 8.47 MB | Unknown | View/Open |
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