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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 1 | 2024 | Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs | PEETERS, Jannes; Bot, Daniel; Ruiz, Gustavo Rovelo; AERTS, Jan | Journal Contribution | A1 |
| 2 | 2023 | Fuzzy Typological (Re)arrangement: a Prototype of Rethinking the Typology of Roman Tablewares from Sagalassos, Southwest Anatolia | KAFETZAKI, Danai; Poblome, Jeroen; AERTS, Jan | Journal Contribution | A1 |
| 3 | 2023 | BioMOBS: A multi-omics visual analytics workflow for biomolecular insight generation | HEYLEN, Dries; PEETERS, Jannes; AERTS, Jan; Ertaylan, Gokhan; HOOYBERGHS, Jef | Journal Contribution | A1 |
| 4 | 2022 | A spatial model to jointly analyze self-reported survey data of COVID-19 symptoms and official COVID-19 incidence data | VRANCKX, Maren; FAES, Christel; MOLENBERGHS, Geert; HENS, Niel; Beutels, Philippe; Van Damme , Pierre; AERTS, Jan; PETROF, Oana; Pepermans, Koen; NEYENS, Thomas | Journal Contribution | A1 |
| 5 | 2022 | Designing a Data Visualisation for Interdisciplinary Scientists. How to Transparently Convey Data Frictions? | Panagiotidou, Georgia; Poblome, Jeroen; AERTS, Jan; Vande Moere, Andrew | Journal Contribution | A1 |
| 6 | 2022 | COVID-19 mortality, excess mortality, deaths per million and infection fatality ratio, Belgium, 9 March 2020 to 28 June 2020 | MOLENBERGHS, Geert; FAES, Christel; VERBEECK, Johan; Deboosere, Patrick; ABRAMS, Steven; WILLEM, Lander; AERTS, Jan; Theeten, Heidi; Devleesschauwer, Brecht; Sierra, Natalia Bustos; Renard, Francoise; HERZOG, Sereina; Lusyne, Patrick; Van der Heyden, Johan; Van Oyen, Herman; Van Damme, Pierre; HENS, Niel | Journal Contribution | A1 |
| 7 | 2022 | MOBS – Multi-Omics Brush for Subgraph visualisation | HEYLEN, Dries; PEETERS, Jannes; Ertaylan, Gökhan; HOOYBERGHS, Jef; AERTS, Jan | Conference Material | C2 |
| 8 | 2021 | De integratie van artistiek en ontwerpend onderzoek binnen een academische context | BESSEMANS, Ann; PINT, Kris; AERTS, Jan | Book Section | B2 |
| 9 | 2021 | Remote Instruction for Data Visualization Design - a Report from the Trenches | AERTS, Jan; PEETERS, Jannes; BOT, Jelmer; KAFETZAKI, Danai; Lamqaddam, Houda | Journal Contribution | A1 |
| 10 | 2021 | A visual analytic approach for the identification of ICU patient subpopulations using ICD diagnostic codes | Alcaide, Daniel; AERTS, Jan | Journal Contribution | A1 |
| 11 | 2021 | Towards Building a Quantitative Proteomics Toolbox in Precision Medicine: A Mini-Review | CORREA ROJO, Alejandro; HEYLEN, Dries; AERTS, Jan; THAS, Olivier; HOOYBERGHS, Jef; Ertaylan, Gokhan; VALKENBORG, Dirk | Journal Contribution | A1 |
| 12 | 2021 | Exploring the Microbiome Analysis and Visualization Landscape | PEETERS, Jannes; THAS, Olivier; SHKEDY, Ziv; KODALCI, Leyla; MUSISI, Connie; OWOKOTOMO, Olajumoke Evangelina; DYCZKO, Aleksandra; HAMAD, Ibrahim; VANGRONSVELD, Jaco; KLEINEWIETFELD, Markus; THIJS, Sofie; AERTS, Jan | Journal Contribution | A1 |
| 13 | 2020 | GoCo: A Gamified Activity for Winnowing Visualization Projects with Interdisciplinary Experts | Panagiotidou, G; AERTS, Jan; Vande Moere, Andrew | Proceedings Paper | C2 |
| 14 | 2020 | Spanning Trees as Approximation of Data Structures | Alcaide, Daniel; AERTS, Jan | Journal Contribution | A1 |
| 15 | 2020 | Belgian COVID-19 Mortality, Excess Deaths, Number of Deaths per Million, and Infection Fatality Rates (8 March - 9 May 2020) | MOLENBERGHS, Geert; FAES, Christel; VERBEECK, Johan; Deboosere, Patrick; ABRAMS, Steven; WILLEM, Lander; AERTS, Jan; Theeten, Heidi; Devleesschauwer, Brecht; Sierra, Natalia Bustos; Renard, Françoise; HERZOG, Sereina; Lusyne, Patrick; Van der Heyden, Johan; Van Oyen, Herman; Van Damme, Pierre; HENS, Niel | Preprint | O |
| 16 | 2020 | Can COVID-19 symptoms as reported in a large-scale online survey be used to optimise spatial predictions of COVID-19 incidence risk in Belgium? | NEYENS, Thomas; FAES, Christel; VRANCKX, Maren; Pepermans, K; HENS, Niel; Van Damme, P; MOLENBERGHS, Geert; AERTS, Jan; Beutels, P | Journal Contribution | A1 |
| 17 | 2019 | Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data | Romagnoni, A; Jegou, S; VAN STEEN, Kristel; Wainrib, G; Hugot, JP; Peyrin-Biroulet, L; Chamaillard, M; Colombel, JF; Cottone, M; D'Amato, M; D'Inca, R; Halfvarson, J; Henderson, P; Karban, A; Kennedy, NA; Khan, MA; Lemann, M; Levine, A; Massey, D; Milla, M; Ng, SME; Oikonomou, I; Peeters, H; Proctor, DD; Rahier, JF; Rutgeerts, P; Seibold, F; Stronati, L; Taylor, KM; Torkvist, L; Ublick, K; Van Limbergen, J; Van Gossum, A; Vatn, MH; Zhang, H; Zhang, W; Andrews, JM; Bampton, PA; Barclay, M; Florin, TH; Gearry, R; Krishnaprasad, K; Lawrance, IC; Mahy, G; Montgomery, GW; Radford-Smith, G; Roberts, RL; Simms, LA; Hanigan, K; Croft, A; Amininijad, L; Cleynen, I; Dewit, O; Franchimont, D; Georges, M; Laukens, D; Theatre, E; Vermeire, S; Aumais, G; Baidoo, L; Barrie, AM; Beck, K; Bernard, EJ; Binion, DG; Bitton, A; Brant, SR; Cho, JH; Cohen, A; Croitoru, K; Daly, MJ; Datta, LW; Deslandres, C; Duerr, RH; Dutridge, D; Ferguson, J; Fultz, J; Goyette, P; Greenberg, GR; Haritunians, T; Jobin, G; Katz, S; Lahaie, RG; McGovern, DP; Nelson, L; Ng, SM; Ning, K; Pare, P; Regueiro, MD; Rioux, JD; Ruggiero, E; Schumm, LP; Schwartz, M; Scott, R; Sharma, Y; Silverberg, MS; Spears, D; Steinhart, AH; Stempak, JM; Swoger, JM; Tsagarelis, C; Zhang, C; Zhao, HY; AERTS, Jan; Ahmad, T; Arbury, H; Attwood, A; Auton, A; Ball, SG; Balmforth, AJ; Barnes, C; Barrett, JC; Barroso, I; Barton, A; Bennett, AJ; Bhaskar, S; Blaszczyk, K; Bowes, J; Brand, OJ; Braund, PS; Bredin, F; Breen, G; Brown, MJ; Bruce, IN; Bull, J; Burren, OS; Burton, J; Byrnes, J; Caesar, S; Cardin, N; Clee, CM; Coffey, AJ; Mc Connell, J; Conrad, DF; Cooper, JD; Dominiczak, AF; Downes, K; Drummond, HE; Dudakia, D; Dunham, A; Ebbs, B; Eccles, D; Edkins, S; Edwards, C; Elliot, A; Emery, P; Evans, DM; Evans, G; Eyre, S; Farmer, A; Ferrier, IN; Flynn, E; Forbes, A; Forty, L; Franklyn, JA; Frayling, TM; Freathy, RM; Giannoulatou, E; Gibbs, P; Gilbert, P; Gordon-Smith, K; Gray, E; Green, E; Groves, CJ; Grozeva, D; Gwilliam, R; Hall, A; Hammond, N; Hardy, M; Harrison, P; Hassanali, N; Hebaishi, H; Hines, S; Hinks, A; Hitman, GA; Hocking, L; Holmes, C; Howard, E; Howard, P; Howson, JMM; Hughes, D; Hunt, S; Isaacs, JD; Jain, M; Jewell, DP; Johnson, T; Jolley, JD; Jones, IR; Jones, LA; Kirov, G; Langford, CF; Lango-Allen, H; Lathrop, GM; Lee, J; Lee, KL; Lees, C; Lewis, K; Lindgren, CM; Maisuria-Armer, M; Maller, J; Mansfield, J; Marchini, JL; Martin, P; Massey, DCO; McArdle, WL; McGuffin, P; McLay, KE; McVean, G; Mentzer, A; Mimmack, ML; Morgan, AE; Morris, AP; Mowat, C; Munroe, PB; Myers, S; Newman, W; Nimmo, ER; O'Donovan, MC; Onipinla, A; Ovington, NR; Owen, MJ; Palin, K; Palotie, A; Parnell, K; Pearson, R; Pernet, D; Perry, JRB; Phillips, A; Plagnol, V; Prescott, NJ; Prokopenko, I; Quail, MA; Rafelt, S; Rayner, NW; Reid, DM; Renwick, A; Ring, SM; Robertson, N; Robson, S; Russell, E; St Clair, D; Sambrook, JG; Sanderson, JD; Sawcer, SJ; Schuilenburg, H; Scott, CE; Seal, S; Shaw-Hawkins, S; Shields, BM; Simmonds, MJ; Smyth, DJ; Somaskantharajah, E; Spanova, K; Steer, S; Stephens, J; Stevens, HE; Stirrups, K; Stone, MA; Strachan, DP; Su, Z; Symmons, DPM; Thompson, JR; Thomson, W; Tobin, MD; Travers, ME; Turnbull, C; Vukcevic, D; Wain, LV; Walker, M; Walker, NM; Wallace, C; Warren-Perry, M; Watkins, NA; Webster, J; Weedon, MN; Wilson, AG; Woodburn, M; Wordsworth, BP; Yau, C; Young, AH; Zeggini, E; Brown, MA; Burton, PR; Caulfield, MJ; Compston, A; Farrall, M; Gough, SCL; Hall, AS; Hattersley, AT; Hill, AVS; Mathew, CG; Pembrey, M; Satsangi, J; Stratton, MR; Worthington, J; Hurles, ME; Duncanson, A; Ouwehand, WH; Parkes, M; Rahman, N; Todd, JA; Samani, NJ; Kwiatkowski, DP; McCarthy, MI; Craddock, N; Deloukas, P; Donnelly, P; Blackwell, JM; Bramon, E; Casas, JP; Corvin, A; Jankowski, J; Markus, HS; Palmer, CNA; Plomin, R; Rautanen, A; Trembath, RC; Viswanathan, AC; Wood, NW; Spencer, CCA; Band, G; Bellenguez, C; Freeman, C; Hellenthal, G; Pirinen, M; Strange, A; Blackburn, H; Bumpstead, SJ; Dronov, S; Gillman, M; Jayakumar, A; McCann, OT; Liddle, J; Potter, SC; Ravindrarajah, R; Ricketts, M; Waller, M; Weston, P; Widaa, S; Whittaker, P | Journal Contribution | A1 |
| 18 | 2019 | HiVA: an integrative wet-and dry-lab platform for haplotype and copy number analysis of single-cell genomes | Esteki, Masoud Zamani; Ardeshirdavani, Amin; Alcaide, Daniel; Masset, Heleen; Ding, Jia; Sifrim, Alejandro; Kumar, Parveen; Dimitriadou, Eftychia; AERTS, Jan; Voet, Thierry; Moreau, Yves; Vermeesch, Joris Robert | Preprint | O |
| 19 | 2019 | Creating and Analysing Networks of Interdisciplinary Conceptualisations of ‘Change’for the Sagalassos Archaeological Research Project | Panagiotidou, G; Vande Moere, A; AERTS, Jan; Poblome, J | Conference Material | C2 |
| 20 | 2019 | Unifying the framework of Multi-Layer Network and Visual Analytics | AERTS, Jan | Journal Contribution | A2 |
| 21 | 2019 | Predicting disease-causing variant combinations | Papadimitriou, Sofia; Gazzo, Andrea; Versbraegen, Nassim; Nachtegael, Charlotte; AERTS, Jan; Moreau, Yves; Van Dooren, Sonia; Nowe, Ann; Smits, Guillaume; Lenaerts, Tom | Journal Contribution | A1 |
| 22 | 2019 | Slow Digital Art History in Action: Project Cornelia's Computational Approach to Seventeenth-century Flemish Creative Communities | BROSENS, Kris; AERTS, Jan; Alen, K; Beerens, RJ; Cardoso, B; De Prekel, I; IVANOVA, Anna; Lamqaddam, H; MOLENBERGHS, Geert; Slegten, A; Truyen, F; Van der Stighelen, K; Verbert, K | Journal Contribution | A1 |
| 23 | 2018 | Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161) | AERTS, Jan; Gehlenborg, Nils; Marai, Georgeta Elisabeta; Nieselt, Kay Katja | Journal Contribution | A2 |
| 24 | 2018 | Op maat matchen. Een wicked probleem dat een innovatieve aanpak vraagt | Kyndt, Eva; AERTS, Jan | Book Section | B2 |
| 25 | 2018 | Op maat matchen. Een wicked probleem dat een innovatieve aanpak vraagt | AERTS, Jan | Journal Contribution | A3 |
| 26 | 2018 | NAHR: A Visual Representation of Social Networks as Support for Art History Research | Lamqaddam, H; AERTS, Jan; Brosens, K; Verbert, K | Proceedings Paper | C1 |
| 27 | 2018 | Multilevel Visual Clustering Exploration for Incomplete Time-Series in Water Samples | Alcaide, Daniel; AERTS, Jan | Proceedings Paper | C1 |
| 28 | 2018 | Visualization of Biological Data-Crossroads (Dagstuhl Seminar 18161) | AERTS, Jan; Gehlenborg, Nils; Marai, Georgeta Elisabeta; Nieselt, Kay Katja | Conference Material | C2 |
| 29 | 2018 | Introducing evolutionary biologists to the analysis of big data: guidelines to organize extended bioinformatics training courses | Faria, Rui; Triant, Deborah; Perdomo-Sabogal, Alvaro; Overduin, Bert; Bleidorn, Christoph; Santana, Clara Isabel Bermudez; Langenberger, David; Dall’Olio, Giovanni Marco; Indrischek, Henrike; AERTS, Jan; Engelhardt, Jan; Engelken, Johannes; Liebal, Katja; Fasold, Mario; Robb, Sofia; Grath, Sonja; Kolora, Sree Rohit Raj; Carvalho, Tiago; Salzburger, Walter; Jovanovic, Vladimir; Nowick, Katja | Journal Contribution | A2 |
| 30 | 2018 | Haplotying and copy-number profiling of single cells by massive parallel sequencing | Masset, H; Esteki, M Zamani; Dimitriadou, E; Melotte, C; Debrock, S; Peeraer, K; Ardeshirdavani, A; Alcaide, D; Sifrim, A; AERTS, Jan; Moreau, Y; Voet, T; Vermeesch, JR | Journal Contribution | M |
| 31 | 2018 | When the tech kids are running too fast: Data visualisation through the lens of art history research | AERTS, Jan | Journal Contribution | A1 |
| 32 | 2018 | GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks | Moerman, T; Santos, SA; Gonzalez-Blas, CB; Simm, J; Moreau, Y; AERTS, Jan; Aerts, S; Kelso, Janet | Journal Contribution | A1 |
| 33 | 2017 | MCLEAN: Multilevel Clustering Exploration As Network | ALCAIDE VILLAR, Daniel; AERTS, Jan | Preprint | O |
| 34 | 2017 | Gene regulatory network analysis in single cells | Aibar, s; González-Blas, C; Wouters, J; Moerman, T; Huynh-Thu, VA; Imrichova, H; Kalender Atak, Z; Hulselmans, G; Rambow, F; Marine, C; Geurts, P; AERTS, Jan; van den Oord, Joost; Aerts, S | Conference Material | C2 |
| 35 | 2017 | Single-cell genome sequencing to characterize chromosome instability in human cleavage stage embryos | Fernandez Gallardo, Elia; Zamani Esteki, Masoud; Van der Aa, Niels; Szanto, Celina; Masset, Heleen; Kumar, Parveen; Ardeshirdavani, Amin; Alcaide, Daniel; Dimitriadou, Eftychia; Theunis, Koen; AERTS, Jan; Moreau, Yves; Debrock, Sophie; De Neubourg, Diane; D'Hooghe, Thomas; Vermeesch, Joris; Voet, Thierry | Proceedings Paper | C2 |
| 36 | 2017 | Interactive Visualization of Massive Location Data using Multi-Scale Trajectories | De Bodt, Thomas; Adams, Bart; AERTS, Jan | Proceedings Paper | C1 |
| 37 | 2017 | VISUALIZING AND ANALYZING COMPLEX AND DYNAMIC NETWORKS OF FLEMISH TAPESTRY ENTREPRENEURS (1640-1720) | Brosens, K; AERTS, Jan; Alen, K; Slegten, A; Truyen, F | Journal Contribution | A1 |
| 38 | 2017 | SCENIC: single-cell regulatory network inference and clustering | Sara Aibar; Carmen Bravo González-Blas; Thomas Moerman; Vân Anh Huynh-Thu; Hana Imrichova; Gert Hulselmans; Florian Rambow; Jean-Christophe Marine; Pierre Geurts; AERTS, Jan; Joost van den Oord; Zeynep Kalender Atak; Jasper Wouters; Stein Aerts | Journal Contribution | A1 |
| 39 | 2016 | Visual anomaly detection in spatio-temporal data using element-specific references | Alcaide, D; Thiyagarajan, J; Lamqaddam, H; Vilaplana, JN; AERTS, Jan | Journal Contribution | A3 |
| 40 | 2016 | InVITe-Towards Intuitive Visualization of Iteration over Text | Lamqaddam, Houda; AERTS, Jan | Proceedings Paper | C1 |
| 41 | 2016 | A Method to Exploit the Structure of Genetic Ancestry Space to Enhance Case-Control Studies | Bodea, C.A.; Neale, B.M.; Ripke, S.; Barclay, M.; Peyrin-Biroulet, L.; Chamaillard, M.; Colombel, J.-F.; Cottone, M.; Croft, A.; D'Incà, R.; Halfvarson, J.; Hanigan, K.; Henderson, P.; Hugot, J.-P.; Karban, A.; Kennedy, N.A.; Khan, M.A.; Lémann, M.; Levine, A.; Massey, D.; Milla, M.; Montgomery, G.W.; Ng, S.M.E.; Oikonomou, I.; Peeters, H.; Proctor, D.D.; Rahier, J.-F.; Roberts, R.; Rutgeerts, P.; Seibold, F.; Stronati, L.; Taylor, K.M.; Törkvist, L.; Ublick, K.; Van Limbergen, J.; Van Gossum, A.; Vatn, M.H.; Zhang, H.; Zhang, W.; Andrews, J.M.; Bampton, P.A.; Florin, T.H.; Gearry, R.; Krishnaprasad, K.; Lawrance, I.C.; Mahy, G.; Radford-Smith, G.; Roberts, R.L.; Simms, L.A.; Amininijad, L.; Cleynen, I.; Dewit, O.; Franchimont, D.; Georges, M.; Laukens, D.; Theatre, E.; Vermeire, S.; Aumais, G.; Baidoo, L.; Barrie, A.M.; Beck, K.; Bernard, E.-J.; Binion, D.G.; Bitton, A.; Brant, S.R.; Cho, J.H.; Cohen, A.; Croitoru, K.; Datta, L.W.; Deslandres, C.; Duerr, R.H.; Dutridge, D.; Ferguson, J.; Fultz, J.; Goyette, P.; Greenberg, G.R.; Haritunians, T.; Jobin, G.; Katz, S.; Lahaie, R.G.; McGovern, D.P.; Nelson, L.; Ng, S.M.; Ning, K.; Paré, P.; Regueiro, M.D.; Rioux, J.D.; Ruggiero, E.; Schumm, L.P.; Schwartz, M.; Scott, R.; Sharma, Y.; Silverberg, M.S.; Spears, D.; Steinhart, A.H.; Stempak, J.M.; Swoger, J.M.; Tsagarelis, C.; Zhang, C.; Zhao, H.; Ahmad, T.; Arbury, H.; AERTS, Jan; Attwood, A.; Auton, A.; Ball, S.G.; Balmforth, A.J.; Barnes, C.; Barrett, J.C.; Barroso, I.; Barton, A.; Bennett, A.J.; Bhaskar, S.; Blaszczyk, K.; Bowes, J.; Brand, O.J.; Braund, P.S.; Bredin, F.; Breen, G.; Brown, M.J.; Bruce, I.N.; Bull, J.; Burren, O.S.; Burton, J.; Byrnes, J.; Caesar, S.; Cardin, N.; Clee, C.M.; Coffey, A.J.; Connell, J.M.C.; Conrad, D.F.; Cooper, J.D.; Dominiczak, A.F.; Downes, K.; Drummond, H.E.; Dudakia, D.; Dunham, A.; Ebbs, B.; Eccles, D.; Edkins, S.; Edwards, C.; Elliot, A.; Emery, P.; Evans, D.M.; Evans, G.; Eyre, S.; Farmer, A.; Ferrier, N.; Flynn, E.; Forbes, A.; Forty, L.; Franklyn, J.A.; Frayling, T.M.; Freathy, R.M.; Giannoulatou, E.; Gibbs, P.; Gilbert, P.; Gordon-Smith, K.; Gray, E.; Green, E.; Groves, C.J.; Grozeva, D.; Gwilliam, R.; Hall, A.; Hammond, N.; Hardy, M.; Harrison, P.; Hassanali, N.; Hebaishi, H.; Hines, S.; Hinks, A.; Hitman, G.A.; Hocking, L.; Holmes, C.; Howard, E.; Howard, P.; Howson, J.M.M.; Hughes, D.; Hunt, S.; Isaacs, J.D.; Jain, M.; Jewell, D.P.; Johnson, T.; Jolley, J.D.; Jones, I.R.; Jones, L.A.; Kirov, G.; Langford, C.F.; Lango-Allen, H.; Lathrop, G.M.; Lee, J.; Lee, K.L.; Lees, C.; Lewis, K.; Lindgren, C.M.; Maisuria-Armer, M.; Maller, J.; Mansfield, J.; Marchini, J.L.; Martin, P.; Massey, D.C.O.; McArdle, W.L.; McGuffin, P.; McLay, K.E.; McVean, G.; Mentzer, A.; Mimmack, M.L.; Morgan, A.E.; Morris, A.P.; Mowat, C.; Munroe, P.B.; Myers, S.; Newman, W.; Nimmo, E.R.; O'Donovan, M.C.; Onipinla, A.; Ovington, N.R.; Owen, M.J.; Palin, K.; Palotie, A.; Parnell, K.; Pearson, R.; Pernet, D.; Perry, J.R.B.; Phillips, A.; Plagnol, V.; Prescott, N.J.; Prokopenko, I.; Quail, M.A.; Rafelt, S.; Rayner, N.W.; Reid, D.M.; Renwick, A.; Ring, S.M.; Robertson, N.; Robson, S.; Russell, E.; St Clair, D.; Sambrook, J.G.; Sanderson, J.D.; Sawcer, S.J.; Schuilenburg, H.; Scott, C.E.; Seal, S.; Shaw-Hawkins, S.; Shields, B.M.; Simmonds, M.J.; Smyth, D.J.; Somaskantharajah, E.; Spanova, K.; Steer, S.; Stephens, J.; Stevens, H.E.; Stirrups, K.; Stone, M.A.; Strachan, D.P.; Su, Z.; Symmons, D.P.M.; Thompson, J.R.; Thomson, W.; Tobin, M.D.; Travers, M.E.; Turnbull, C.; Vukcevic, D.; Wain, L.V.; Walker, M.; Walker, N.M.; Wallace, C.; Warren-Perry, M.; Watkins, N.A.; Webster, J.; Weedon, M.N.; Wilson, A.G.; Woodburn, M.; Wordsworth, B.P.; Yau, C.; Young, A.H.; Zeggini, E.; Brown, M.A.; Burton, P.R.; Caulfield, M.J.; Compston, A.; Farrall, M.; Gough, S.C.L.; Hall, A.S.; Hattersley, A.T.; Hill, A.V.S.; Mathew, C.G.; Pembrey, M.; Satsangi, J.; Stratton, M.R.; Worthington, J.; Hurles, M.E.; Duncanson, A.; Ouwehand, W.H.; Parkes, M.; Rahman, N.; Todd, J.A.; Samani, N.J.; Kwiatkowski, D.P.; McCarthy, M.I.; Craddock, N.; Deloukas, P.; Donnelly, P.; Blackwell, J.M.; Bramon, E.; Casas, J.P.; Corvin, A.; Jankowski, J.; Markus, H.S.; Palmer, C.N.A.; Plomin, R.; Rautanen, A.; Trembath, R.C.; Viswanathan, A.C.; Wood, N.W.; Spencer, C.C.A.; Band, G.; Bellenguez, C.; Freeman, C.; Hellenthal, G.; Pirinen, M.; Strange, A.; Blackburn, H.; Bumpstead, S.J.; Dronov, S.; Gillman, M.; Jayakumar, A.; McCann, O.T.; Liddle, J.; Potter, S.C.; Ravindrarajah, R.; Ricketts, M.; Waller, M.; Weston, P.; Widaa, S.; Whittaker, P.; Daly, M.J.; Devlin, B.; Roeder, K. | Journal Contribution | A1 |
| 42 | 2016 | Erratum: Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals (AIDS (2015) 29 (2045-2052)) | Winand, R.; Theys, K.; Eusébio, M.; AERTS, Jan; Camacho, R.J.; Gomes, P. | Journal Contribution | M |
| 43 | 2016 | Candidate gene prioritization with Endeavour | Tranchevent, Léon-Charles; Ardeshirdavani, Amin; ElShal, Sarah; ALCAIDE VILLAR, Daniel; AERTS, Jan; Auboeuf, Didier; Moreau, Yves | Journal Contribution | A1 |
| 44 | 2015 | Identifying brain network dysfunctions during epileptogenesis in a model of temporal lobe epilepsy | Daniele, Bertoglio; Halima, Amhaoul; Disha, Shah; Ryo, Sakai; Jeroen, Verhaeghe; Leonie, Wyffels; Steven, Staelens; Marleen, Verhoye; Annemie, Van Der Linden; AERTS, Jan; Stefanie, Dedeurwaerdere | Conference Material | C2 |
| 45 | 2015 | Card sorting techniques for domain characterization in problem-driven visualization research | Sakai, Ryo; AERTS, Jan | Proceedings Paper | C2 |
| 46 | 2015 | Highlights from the 5th Symposium on Biological Data Visualization: Part 2 | AERTS, Jan; Marai, G Elisabeta; Nieselt, Kay; Nielsen, Cydney; Streit, Marc; Weiskopf, Daniel | Proceedings Paper | C1 |
| 47 | 2015 | Assessing transmissibility of HIV-1 drug resistance mutations from treated and from drug-naive individuals | Winand, R; Theys, K; Eusebio, M; AERTS, Jan; Camacho, RJ; Gomes, P; Suchard, MA; Vandamme, AM; Abecasis, AB | Journal Contribution | A1 |
| 48 | 2015 | Highlights from the 5th Symposium on Biological Data Visualization: Part 1 | AERTS, Jan; Marai, G E; Nieselt, K; Nielsen, C; Streit, M; weiskopf, D | Proceedings Paper | C1 |
| 49 | 2015 | Art meets science: The Cosmopolitan Chicken Research Project | Stinckens, A; Vereijken, A; Ons, E; Konings, P; Van As, P; Cuppens, H; Moreau, Y; Sakai, R; AERTS, Jan; Goddeeris, B; Buys, N; Vanmechelen, K; Cassiman, JJ | Journal Contribution | A1 |
| 50 | 2015 | Erratum: Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network (Nature Communications (2014) 5 (4868) DOI: 10.1038/ncomms5868) | Pougach, K.; Voet, A.; Kondrashov, F.A.; Voordeckers, K.; Christiaens, J.F.; Baying, B.; Benes, V.; Sakai, R.; AERTS, Jan; Zhu, B.; Van Dijck, P.; Verstrepen, K.J. | Journal Contribution | M |
| 51 | 2014 | Sequence Diversity Diagram for Comparative Analysis of Multiple Sequence Alignments | Sakai, Ryo; AERTS, Jan | Proceedings Paper | C1 |
| 52 | 2014 | A three step process to design visualisations for GeoTemporal analysis | Chua, Alvin; Sakai, Ryo; AERTS, Jan; Vande Moere, Andrew | Proceedings Paper | C1 |
| 53 | 2014 | A Pragmatic Approach to Biases in Visual Data Analysis | Verbeiren, Tony; Sakay, Ryo; AERTS, Jan | Conference Material | C2 |
| 54 | 2014 | dendsort: modular leaf ordering methods for dendrogram representations in R | Sakai, Ryo; Winand, Raf; Verbeiren, Toni; Moere, Andrew Vande; AERTS, Jan | Journal Contribution | A3 |
| 55 | 2014 | A self-tuning genetic algorithm with applications in biomarker discovery | Popovic, D.; Moschopoulos, C.; Sakai, R.; Sifrim, A.; AERTS, Jan; Moreau, Y.; DE MOOR, Bart | Proceedings Paper | C1 |
| 56 | 2014 | In vitro screening of embryos by whole-genome sequencing: now, in the future or never? | Winand , R.; Hens, K.; Dondorp, W.; de Wert, G.; Moreau, Y.; Vermeesch, J. R.; Liebaers, I.; AERTS, Jan | Journal Contribution | A1 |
| 57 | 2014 | BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains | Katayama, T; Wilkinson, MD; Aoki-Kinoshita, KF; Kawashima, S; Yamamoto, Y; Yamaguchi, A; Okamoto, S; Kawano, S; Kim, JD; Wang, Y; Wu, HY; Kano, Y; Ono, H; Bono, H; Kocbek, S; AERTS, Jan; Akune, Y; Antezana, E; Arakawa, K; Aranda, B; Baran, J; Bolleman, J; Bonnal, RJP; Buttigieg, PL; Campbell, MP; Chen, YA; Chiba, H; Cock, PJA; Cohen, KB; Constantin, A; Duck, G; Dumontier, M; Fujisawa, T; Fujiwara, T; Goto, N; Hoehndorf, R; Igarashi, Y; Itaya, H; Ito, M; Iwasaki, W; Kalas, M; Katoda, T; Kim, T; Kokubu, A; Komiyama, Y; Kotera, M; Laibe, C; Lapp, H; Lutteke, T; Marshall, MS; Mori, T; Mori, H; Morita, M; Murakami, K; Nakao, M; Narimatsu, H; Nishide, H; Nishimura, Y; Nystrom-Persson, J; Ogishima, S; Okamura, Y; Okuda, S; Oshita, K; Packer, NH; Prins, P; Ranzinger, R; Rocca-Serra, P; Sansone, S; Sawaki, H; Shin, SH; Splendiani, A; Strozzi, F; Tadaka, S; Toukach, P; Uchiyama, I; Umezaki, M; Vos, R; Whetzel, PL; Yamada, I; Yamasaki, C; Yamashita, R; York, WS; Zmasek, CM; Kawamoto, S; Takagi, T | Journal Contribution | A1 |
| 58 | 2014 | Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network | Pougach, K; Voet, A; Kondrashov, FA; Voordeckers, K; Christiaens, JF; Baying, B; Benes, V; Sakai, R; AERTS, Jan; Zhu, B; Van Dijck, P; Verstrepen, KJ | Journal Contribution | A1 |
| 59 | 2013 | Meander: visually exploring the structural variome using space-filling curves | Pavlopoulos, Georgios A.; Kumar, Parveen; Sifrim, Alejandro; Sakai, Ryo; Lin, Meng Lay; Voet, Thierry; Moreau, Yves; AERTS, Jan | Journal Contribution | A1 |
| 60 | 2013 | TrioVis - using visualization to investigate the effect of filter settings on genotype concordance in trios | Sakai, Ryo; Sifrim, Alejandro; Vande Moere, Andrew; AERTS, Jan | Journal Contribution | A1 |
| 61 | 2013 | Pipit: visualizing functional impacts of structural variations | Sakai, R; Moisse, M; Reumers, J; AERTS, Jan | Journal Contribution | A1 |
| 62 | 2013 | Unraveling genomic variation from next generation sequencing data | Pavlopoulos, G.A.; Oulas, A.; Iacucci, E.; Sifrim, A.; Moreau, Y.; Schneider, R.; AERTS, Jan; Iliopoulos, I. | Journal Contribution | A1 |
| 63 | 2013 | Novel Loci Associated with Increased Risk of Sudden Cardiac Death in the Context of Coronary Artery Disease | Huertas-Vazquez, A.; Nelson, C.P.; Guo, X.; Reinier, K.; Uy-Evanado, A.; Teodorescu, C.; Ayala, J.; Jerger, K.; Chugh, H.; Braund, P.S.; Deloukas, P.; Hall, A.S.; Balmforth, A.J.; Jones, M.; Taylor, K.D.; Pulit, S.L.; Newton-Cheh, C.; Gunson, K.; Jui, J.; Rotter, J.I.; Albert, C.M.; Samani, N.J.; Chugh, S.S.; AERTS, Jan; Ahmad, T.; Arbury, H.; Attwood, A.; Auton, A.; Ball, S.G.; Barnes, C.; Barrett, J.C.; Barroso, I.; Barton, A.; Bennett, A.J.; Bhaskar, S.; Blaszczyk, K.; Bowes, J.; Brand, O.J.; Bredin, F.; Breen, G.; Brown, M.J.; Bruce, I.N.; Bull, J.; Burren, O.S.; Burton, J.; Byrnes, J.; Caesar, S.; Cardin, N.; Clee, C.M.; Coffey, A.J.; Connell, J.M.C.; Conrad, D.F.; Cooper, J.D.; Dominiczak, A.F.; Downes, K.; Drummond, H.E.; Dudakia, D.; Dunham, A.; Ebbs, B.; Eccles, D.; Edkins, S.; Edwards, C.; Elliot, A.; Emery, P.; Evans, D.M.; Evans, G.; Eyre, S.; Farmer, A.; Nicol Ferrier, I.; Flynn, E.; Forbes, A.; Forty, L.; Franklyn, J.A.; Frayling, T.M.; Freathy, R.M.; Giannoulatou, E.; Gibbs, P.; Gilbert, P.; Gordon-Smith, K.; Gray, E.; Green, E.; Groves, C.J.; Grozeva, D.; Gwilliam, R.; Hall, A.; Hammond, N.; Hardy, M.; Harrison, P.; Hassanali, N.; Hebaishi, H.; Hines, S.; Hinks, A.; Hitman, G.A.; Hocking, L.; Holmes, C.; Howard, E.; Howard, P.; Howson, J.M.M.; Hughes, D.; Hunt, S.; Isaacs, J.D.; Jain, M.; Jewell, D.P.; Johnson, T.; Jolley, J.D.; Jones, I.R.; Jones, L.A.; Kirov, G.; Langford, C.F.; Lango-Allen, H.; Lathrop, G.M.; Lee, J.; Lee, K.L.; Lees, C.; Lewis, K.; Lindgren, C.M.; Maisuria-Armer, M.; Maller, J.; Mansfield, J.; Marchini, J.L.; Martin, P.; Massey, D.C.O.; McArdle, W.L.; McGuffin, P.; McLay, K.E.; McVean, G.; Mentzer, A.; Mimmack, M.L.; Morgan, A.E.; Morris, A.P.; Mowat, C.; Munroe, P.B.; Myers, S.; Newman, W.; Nimmo, E.R.; O'Donovan, M.C.; Onipinla, A.; Ovington, N.R.; Owen, M.J.; Palin, K.; Palotie, A.; Parnell, K.; Pearson, R.; Pernet, D.; Perry, J.R.B.; Phillips, A.; Plagnol, V.; Prescott, N.J.; Prokopenko, I.; Quail, M.A.; Rafelt, S.; Rayner, N.W.; Reid, D.M.; Renwick, A.; Ring, S.M.; Robertson, N.; Robson, S.; Russell, E.; St Clair, D.; Sambrook, J.G.; Sanderson, J.D.; Sawcer, S.J.; Schuilenburg, H.; Scott, C.E.; Scott, R.; Seal, S.; Shaw-Hawkins, S.; Shields, B.M.; Simmonds, M.J.; Smyth, D.J.; Somaskantharajah, E.; Spanova, K.; Steer, S.; Stephens, J.; Stevens, H.E.; Stirrups, K.; Stone, M.A.; Strachan, D.P.; Su, Z.; Symmons, D.P.M.; Thompson, J.R.; Thomson, W.; Tobin, M.D.; Travers, M.E.; Turnbull, C.; Vukcevic, D.; Wain, L.V.; Walker, M.; Walker, N.M.; Wallace, C.; Warren-Perry, M.; Watkins, N.A.; Webster, J.; Weedon, M.N.; Wilson, A.G.; Woodburn, M.; Wordsworth, B.P.; Yau, C.; Young, A.H.; Zeggini, E.; Brown, M.A.; Burton, P.R.; Caulfield, M.J.; Compston, A.; Farrall, M.; Gough, S.C.L.; Hattersley, A.T.; Hill, A.V.S.; Mathew, C.G.; Pembrey, M.; Satsangi, J.; Stratton, M.R.; Worthington, J.; Hurles, M.E.; Duncanson, A.; Ouwehand, W.H.; Parkes, M.; Rahman, N.; Todd, J.A.; Kwiatkowski, D.P.; McCarthy, M.I.; Craddock, N.; Donnelly, P. | Journal Contribution | A1 |
| 64 | 2013 | The 3rd DBCLS BioHackathon: Improving life science data integration with Semantic Web technologies | Katayama, T; Wilkinson, MD; Micklem, G; Kawashima, S; Yamaguchi, A; Nakao, M; Yamamoto, Y; Okamoto, S; Oouchida, K; Chun, HW; AERTS, Jan; Afzal, H; Antezana, E; Arakawa, K; Aranda, B; Belleau, F; Bolleman, J; Bonnal, RJP; Chapman, B; Cock, PJA; Eriksson, T; Gordon, PMK; Goto, N; Hayashi, K; Horn, H; Ishiwata, R; Kaminuma, E; Kasprzyk, A; Kawaji, H; Kido, N; Kim, YJ; Kinjo, AR; Konishi, F; Kwon, KH; Labarga, A; Lamprecht, AL; Lin, Y; Lindenbaum, P; McCarthy, L; Morita, H; Murakami, K; Nagao, K; Nishida, K; Nishimura, K; Nishizawa, T; Ogishima, S; Ono, K; Oshita, K; Park, KJ; Prins, P; Saito, TL; Samwald, M; Satagopam, VP; Shigemoto, Y; Smith, R; Splendiani, A; Sugawara, H; Taylor, J; Vos, RA; Withers, D; Yamasaki, C; Zmasek, CM; Kawamoto, S; Okubo, K; Asai, K; Takagi, T | Journal Contribution | A1 |
| 65 | 2013 | eXtasy: variant prioritization by genomic data fusion | Sifrim, A; Popovic, D; Tranchevent, LC; Ardeshirdavani, A; Sakai, R; Konings, P; Vermeesch, JR; AERTS, Jan; DE MOOR, Bart; Moreau, Y | Journal Contribution | A1 |
| 66 | 2012 | Changing computational research. The challenges ahead | Neylon, Cameron; AERTS, Jan; Brown, C Titus; Coles, Simon J; Hatton, Les; Lemire, Daniel; Millman, K Jarrod; Murray-Rust, Peter; Perez, Fernando; Saunders, Neil; Shah, Nigam; Smith, Arfon; Varoquaux, Gaël; Willighagen, Egon | Journal Contribution | A2 |
| 67 | 2012 | Visualizing High Dimensional Datasets Using Parallel Coordinates: Application to Gene Prioritization | Boogaerts, T; Tranchevent, LC; Pavlopoulos, GA; AERTS, Jan; Vandewalle, J | Proceedings Paper | C1 |
| 68 | 2012 | Arena3D: Visualizing time-driven phenotypic differences in biological systems | Secrier, M.; Pavlopoulos, G.A.; AERTS, Jan; Schneider, R. | Journal Contribution | A1 |
| 69 | 2012 | The Ruby UCSC API: Accessing the UCSC genome database using Ruby | Mishima, H.; AERTS, Jan; Katayama, T.; Bonnal, R.J.P.; Yoshiura, K.-I. | Journal Contribution | A1 |
| 70 | 2012 | An eQTL biological data visualization challenge and approaches from the visualization community | Bartlett, C.W.; Cheong, S.Y.; Hou, L.; Paquette, J.; Lum, P.Y.; Jäger, G.; Battke, F.; Vehlow, C.; Heinrich, J.; Nieselt, K.; Sakai, R.; AERTS, Jan; Ray, W.C. | Journal Contribution | A1 |
| 71 | 2012 | Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics | Bonnal, RJP; AERTS, Jan; Githinji, G; Goto, N; MacLean, D; Miller, CA; Mishima, H; Pagani, M; Ramirez-Gonzalez, R; Smant, G; Strozzi, F; Syme, R; Vos, R; Wennblom, TJ; Woodcroft, BJ; Katayama, T; Prins, P | Journal Contribution | A1 |
| 72 | 2012 | Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease | Sifrim, A; Van Houdt, JKJ; Tranchevent, LC; Nowakowska, B; Sakai, R; Pavlopoulos, GA; Devriendt, K; Vermeesch, JR; Moreau, Y; AERTS, Jan | Journal Contribution | A1 |
| 73 | 2012 | Interpretation of single nucleotide variation in human disease: a Swiss-knife approach to annotation and analysis | Sifrim, A; Van Houdt; Tranchevent; Nowakowska; Sakai; Pavlopoulos; Devriendt, K; Vermeesch, JR; Moreau, Y; AERTS, Jan | Journal Contribution | A1 |
| 74 | 2012 | Exome Sequencing and Genetic Testing for MODY | Johansson, S; Irgens, H; Chudasama, KK; Molnes, J; AERTS, Jan; Roque, FS; Jonassen, I; Levy, S; Lima, K; Knappskog, PM; Bell, GI; Molven, A; Njolstad, PR; Prokunina-Olsson, Ludmila | Journal Contribution | A1 |
| 75 | 2011 | CEP152 is a genome maintenance protein disrupted in Seckel syndrome | Kalay, E.; Yigit, G.; Aslan, Y.; Brown, K.E.; Pohl, E.; Bicknell, L.S.; Kayserili, H.; Li, Y.; Tüysüz, B.; Nürnberg, G.; Kiess, W.; Koegl, M.; Baessmann, I.; Buruk, K.; Toraman, B.; Kayipmaz, S.; Kul, S.; Ikbal, M.; Turner, D.J.; Taylor, M.S.; AERTS, Jan; Scott, C.; Milstein, K.; Dollfus, H.; Wieczorek, D.; Brunner, H.G.; Hurles, M.; Jackson, A.P.; Rauch, A.; Nürnberg, P.; Karagüzel, A.; Wollnik, B. | Journal Contribution | A1 |
| 76 | 2011 | A Ruby API to query the Ensembl database for genomic features | Strozzi, F.; AERTS, Jan | Journal Contribution | A1 |
| 77 | 2011 | Using graph theory to analyze biological networks | Pavlopoulos, G.A.; Secrier, M.; Moschopoulos, C.N.; Soldatos, T.G.; Kossida, S.; AERTS, Jan; Schneider, R.; Bagos, P.G. | Journal Contribution | A1 |
| 78 | 2011 | Medusa: A tool for exploring and clustering biological networks | Pavlopoulos, G.A.; Hooper, S.D.; Sifrim, A.; Schneider, R.; AERTS, Jan | Journal Contribution | A2 |
| 79 | 2011 | Which clustering algorithm is better for predicting protein complexes? | Moschopoulos, C.N.; Pavlopoulos, G.A.; Iacucci, E.; AERTS, Jan; Likothanassis, S.; Schneider, R.; Kossida, S. | Journal Contribution | A2 |
| 80 | 2011 | The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications | Katayama, T; Wilkinson, MD; Vos, R; Kawashima, T; Kawashima, S; Nakao, M; Yamamoto, Y; Chun, HW; Yamaguchi, A; Kawano, S; AERTS, Jan; Aoki-Kinoshita, KF; Arakawa, K; Aranda, B; Bonnal, RJP; Fernandez, JM; Fujisawa, T; Gordon, PMK; Goto, N; Haider, S; Harris, T; Hatakeyama, T; Ho, I; Itoh, M; Kasprzyk, A; Kido, N; Kim, YJ; Kinjo, AR; Konishi, F; Kovarskaya, Y; von Kuster, G; Labarga, A; Limviphuvadh, V; McCarthy, L; Nakamura, Y; Nam, Y; Nishida, K; Nishimura, K; Nishizawa, T; Ogishima, S; Oinn, T; Okamoto, S; Okuda, S; Ono, K; Oshita, K; Park, KJ; Putnam, N; Senger, M; Severin, J; Shigemoto, Y; Sugawara, H; Taylor, J; Trelles, O; Yamasaki, C; Yamashita, R; Satoh, N; Takagi, T | Journal Contribution | A1 |
| 81 | 2010 | BioRuby: Bioinformatics software for the Ruby programming language | Goto, N.; Prins, P.; Nakao, M.; Bonnal, R.; AERTS, Jan; Katayama, T. | Journal Contribution | A1 |
| 82 | 2010 | Meeting report from the second 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) workshop | Kettner, Carsten; Field, Dawn; Sansone, Susanna-Assunta; Taylor, Chris; AERTS, Jan; Binns, Nigel; Blake, Andrew; Britten, Cedrik M.; de Marco, Ario; Fostel, Jennifer; Gaudet, Pascale; González-Beltrán, Alejandra; Hardy, Nigel; Hellemans, Jan; Hermjakob, Henning; Juty, Nick; Leebens-Mack, Jim; Maguire, Eamonn; Neumann, Steffen; Orchard, Sandra; Parkinson, Helen; Piel, William; Ranganathan, Shoba; Rocca-Serra, Philippe; Santarsiero, Annapaola; Shotton, David; Sterk, Peter; Untergasser, Andreas; Whetzel, Patricia L. | Journal Contribution | M |
| 83 | 2010 | Origins and functional impact of copy number variation in the human genome | Conrad, D.F.; Pinto, D.; Redon, R.; Feuk, L.; Gokcumen, O.; Zhang, Y.; AERTS, Jan; Andrews, T.D.; Barnes, C.; Campbell, P.; Fitzgerald, T.; Hu, M.; Ihm, C.H.; Kristiansson, K.; MacArthur, D.G.; MacDonald, J.R.; Onyiah, I.; Pang, A.W.C.; Robson, S.; Stirrups, K.; Valsesia, A.; Walter, K.; Wei, J.; Tyler-Smith, C.; Carter, N.P.; Lee, C.; Scherer, S.W.; Hurles, M.E. | Journal Contribution | A1 |
| 84 | 2010 | Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls | Craddock, N; Hurles, ME; Cardin, N; Pearson, RD; Plagnol, V; Robson, S; Vukcevic, D; Barnes, C; Conrad, DF; Giannoulatou, E; Holmes, C; Marchini, JL; Stirrups, K; Tobin, MD; Wain, LV; Yau, C; AERTS, Jan; Ahmad, T; Andrews, TD; Arbury, H; Attwood, A; Auton, A; Ball, SG; Balmforth, AJ; Barrett, JC; Barroso, I; Barton, A; Bennett, AJ; Bhaskar, S; Blaszczyk, K; Bowes, J; Brand, OJ; Braund, PS; Bredin, F; Breen, G; Brown, MJ; Bruce, IN; Bull, J; Burren, OS; Burton, J; Byrnes, J; Caesar, S; Clee, CM; Coffey, AJ; Connell, JMC; Cooper, JD; Dominiczak, AF; Downes, K; Drummond, HE; Dudakia, D; Dunham, A; Ebbs, B; Eccles, D; Edkins, S; Edwards, C; Elliot, A; Emery, P; Evans, DM; Evans, G; Eyre, S; Farmer, A; Ferrier, IN; Feuk, L; Fitzgerald, T; Flynn, E; Forbes, A; Forty, L; Franklyn, JA; Freathy, RM; Gibbs, P; Gilbert, P; Gokumen, O; Gordon-Smith, K; Gray, E; Green, E; Groves, CJ; Grozeva, D; Gwilliam, R; Hall, A; Hammond, N; Hardy, M; Harrison, P; Hassanali, N; Hebaishi, H; Hines, S; Hinks, A; Hitman, GA; Hocking, L; Howard, E; Howard, P; Howson, JMM; Hughes, D; Hunt, S; Isaacs, JD; Jain, M; Jewell, DP; Johnson, T; Jolley, JD; Jones, IR; Jones, LA; Kirov, G; Langford, CF; Lango-Allen, H; Lathrop, GM; Lee, J; Lee, KL; Lees, C; Lewis, K; Lindgren, CM; Maisuria-Armer, M; Maller, J; Mansfield, J; Martin, P; Massey, DCO; McArdle, WL; McGuffin, P; McLay, KE; Mentzer, A; Mimmack, ML; Morgan, AE; Morris, AP; Mowat, C; Myers, S; Newman, W; Nimmo, ER; O'Donovan, MC; Onipinla, A; Onyiah, I; Ovington, NR; Owen, MJ; Palin, K; Parnell, K; Pernet, D; Perry, JRB; Phillips, A; Pinto, D; Prescott, NJ; Prokopenko, I; Quail, MA; Rafelt, S; Rayner, NW; Redon, R; Reid, DM; Renwick, A; Ring, SM; Robertson, N; Russell, E; St Clair, D; Sambrook, JG; Sanderson, JD; Schuilenburg, H; Scott, CE; Scott, R; Seal, S; Shaw-Hawkins, S; Shields, BM; Simmonds, MJ; Smyth, DJ; Somaskantharajah, E; Spanova, K; Steer, S; Stephens, J; Stevens, HE; Stone, MA; Su, Z; Symmons, DPM; Thompson, JR; Thomson, W; Travers, ME; Turnbull, C; Valsesia, A; Walker, M; Walker, NM; Wallace, C; Warren-Perry, M; Watkins, NA; Webster, J; Weedon, MN; Wilson, AG; Woodburn, M; Wordsworth, BP; Young, AH; Zeggini, E; Carter, NP; Frayling, TM; Lee, C; McVean, G; Munroe, PB; Palotie, A; Sawcer, SJ; Scherer, SW; Strachan, DP; Tyler-Smith, C; Brown, MA; Burton, PR; Caulfield, MJ; Compston, A; Farrall, M; Gough, SCL; Hall, AS; Hattersley, AT; Hill, AVS; Mathew, CG; Pembrey, M; Satsangi, J; Stratton, MR; Worthington, J; Deloukas, P; Duncanson, A; Kwiatkowski, DP; McCarthy, MI; Ouwehand, WH; Parkes, M; Rahman, N; Todd, JA; Samani, NJ; Donnelly, P | Journal Contribution | A1 |
| 85 | 2010 | The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows | Katayama, T; Arakawa, K; Nakao, M; Ono, K; Aoki-Kinoshita, KF; Yamamoto, Y; Yamaguchi, A; Kawashima, S; Chun, HW; AERTS, Jan; Aranda, B; Barboza, LH; Bonnal, RJP; Bruskiewich, R; Bryne, JC; Fernandez, JM; Funahashi, A; Gordon, PMK; Goto, N; Groscurth, A; Gutteridge, A; Holland, R; Kano, Y; Kawas, EA; Kerhornou, A; Kibukawa, E; Kinjo, AR; Kuhn, M; Lapp, H; Lehvaslaiho, H; Nakamura, H; Nakamura, Y; Nishizawa, T; Nobata, C; Noguchi, T; Oinn, TM; Okamoto, S; Owen, S; Pafilis, E; Pocock, M; Prins, P; Ranzinger, R; Reisinger, F; Salwinski, L; Schreiber, M; Senger, M; Shigemoto, Y; Standley, DM; Sugawara, H; Tashiro, T; Trelles, O; Vos, RA; Wilkinson, MD; York, W; Zmasek, CM; Asai, K; Takagi, T | Journal Contribution | A1 |
| 86 | 2009 | Structural variation in Great Ape genomes | AERTS, Jan; Tyler-Smith, Chris | Book Section | B2 |
| 87 | 2009 | Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds | Gibbs, R.A.; Taylor, J.F.; Van Tassell, C.P.; Barendse, W.; Eversole, K.A.; Gill, C.A.; Green, R.D.; Hamernik, D.L.; Kappes, S.M.; Lien, S.; Matukumalli, L.K.; McEwan, J.C.; Nazareth, L.V.; Schnabel, R.D.; Weinstock, G.M.; Wheeler, D.A.; Ajmone-Marsan, P.; Barends, W.; Boettcher, P.J.; Caetano, A.R.; Garcia, J.F.; OlivierHanotte; Mariani, P.; Skow, L.C.; Sonstegard, T.S.; Williams, J.L.; Diallo, B.; Hailemariam, L.; Hanotte, O.; Martinez, M.L.; Morris, C.A.; Silva, L.O.C.; Spelman, R.J.; Mulatu, W.; Zhao, K.; Abbey, C.A.; Agaba, M.; Araujo, F.R.; Bunch, R.J.; Burton, J.; Gorni, C.; Harrison, B.E.; Luff, B.; Machado, M.A.; Mwakaya, J.; Plastow, G.; Sim, W.; Smith, T.; Thomas, M.B.; Valentini, A.; Williams, P.; Womack, J.; Woolliams, J.A.; Liu, Y.; Qin, X.; Worley, K.C.; Gao, C.; Jiang, H.; Moore, S.S.; Ren, Y.; Song, X.-Z.; Bustamante, C.D.; Hernandez, R.D.; Muzny, D.M.; Patil, S.; Lucas, A.S.; Fu, Q.; Kent, M.P.; Vega, R.; Matukumalli, A.; McWilliam, S.; Sclep, G.; Bryc, K.; Choi, J.; Gao, H.; Grefenstette, J.J.; Murdoch, B.; Stella, A.; Villa-Angulo, R.; Wright, M.; AERTS, Jan; Jann, O.; Negrini, R.; Goddard, M.E.; Hayes, B.J.; Bradley, D.G.; Da Silva, M.B.; Lau, L.P.L.; Liu, G.E.; Lynn, D.J.; Panzitta, F.; Dodds, K.G. | Journal Contribution | A1 |
| 88 | 2009 | The genome sequence of taurine cattle: A window to ruminant biology and evolution | Elsik, C.G.; Tellam, R.L.; Worley, K.C.; Gibbs, R.A.; Muzny, D.M.; Weinstock, G.M.; Adelson, D.L.; Eichler, E.E.; Elnitski, L.; Guigó, R.; Hamernik, D.L.; Kappes, S.M.; Lewin, H.A.; Lynn, D.J.; Nicholas, F.W.; Reymond, A.; Rijnkels, M.; Skow, L.C.; Zdobnov, E.M.; Schook, L.; Womack, J.; Alioto, T.; Antonarakis, S.E.; Astashyn, A.; Chappie, C.E.; Chen, H.-C.; Chrast, J.; Câmara, F.; Ermolaeva, O.; Henrichsen, C.N.; Hlavina, W.; Kapustin, Y.; Kiryutin, B.; Kitts, P.; Kokocinski, F.; Landrum, M.; Maglott, D.; Pruitt, K.; Sapojnikov, V.; Searle, S.M.; Solovyev, V.; Souvorov, A.; Ucla, C.; Wyss, C.; Anzola, J.M.; Gerlach, D.; Elhaik, E.; Graur, D.; Reese, J.T.; Edgar, R.C.; McEwan, J.C.; Payne, G.M.; Raison, J.M.; Junier, T.; Kriventseva, E.V.; Eyras, E.; Plass, M.; Donthu, R.; Larkin, D.M.; Reecy, J.; Yang, M.Q.; Chen, L.; Cheng, Z.; Chitko-McKown, C.G.; Liu, G.E.; Matukumalli, L.K.; Song, J.; Zhu, B.; Bradley, D.G.; Brinkman, F.S.L.; Lau, L.P.L.; Whiteside, M.D.; Walker, A.; Wheeler, T.T.; Casey, T.; German, J.B.; Lemay, D.G.; Maqbool, N.J.; Molenaar, A.J.; Seo, S.; Stothard, P.; Baldwin, C.L.; Baxter, R.; Brinkmeyer-Larigford, C.L.; Brown, W.C.; Childers, C.P.; Connelley, T.; Ellis, S.A.; Fritz, K.; Glass, E.J.; Herzig, C.T.A.; Livanainen, A.; Lahmers, K.K.; Bennett, A.K.; Dickens, C.M.; Gilbert, J.G.R.; Hagen, D.E.; Salih, H.; AERTS, Jan; Caetano, A.R.; Dalrymple, B.; Garcia, J.F.; Gill, C.A.; Hiendleder, S.G.; Memili, E.; Spurlock, D.; Williams, J.L.; Alexander, L.; Brownstein, M.J.; Guan, L.; Holt, R.A.; Jones, S.J.M.; Marra, M.A.; Moore, R.; Moore, S.S.; Roberts, A.; Taniguchi, M.; Waterman, R.C.; Chacko, J.; Chandrabose, M.M.; Cree, A.; Dao, M.D.; Dinh, H.H.; Gabisi, R.A.; Hines, S.; Hume, J.; Jhangiani, S.N.; Joshi, V.; Kovar, C.L.; Lewis, L.R.; Liu, Y.-S.; Lopez, J.; Morgan, M.B.; Nguyen, N.B.; Okwuonu, G.O.; Ruiz, S.J.; Santibanez, J.; Wright, R.A.; Buhay, C.; Ding, Y.; Dugan-Rocha, S.; Herdandez, J.; Holder, M.; Sabo, A.; Egan, A.; Goodell, J.; Wilczek-Boney, K.; Fowler, G.R.; Hitchens, M.E.; Lozado, R.J.; Moen, C.; Steffen, D.; Warren, J.T.; Zhang, J.; Chiu, R.; Schein, J.E.; Durbin, K.J.; Havlak, P.; Jiang, H.; Qin, X.; Ren, Y.; Liu, Y.; Shen, Y.; Song, H.; Bell, S.N.; Davis, C.; Johnson, A.J.; Lee, S.; Nazareth, L.V.; Patel, B.M.; Pu, L.-L.; Vattathil, S.; Williams Jr., R.L.; Curry, S.; Hamilton, C.; Sodergren, E.; Wheeler, D.A.; Barris, W.; Bennett, G.L.; Eggen, A.; Green, R.D.; Harhay, G.P.; Hobbs, M.; Jann, O.; Keele, J.W.; Kent, M.P.; Lien, S.; McKay, S.D.; McWilliam, S.; Ratnakumar, A.; Schnabel, R.D.; Smith, T.; Snelling, W.M.; Sonstegard, T.S.; Stone, R.T.; Sugimoto, Y.; Takasuga, A.; Taylor, J.F.; Van Tassell, C.P.; MacNeil, M.D.; Abatepaulo, A.R.R.; Abbey, C.A.; Ahola, V.; Almeida, L.G.; Amadio, A.F.; Anatriello, E.; Bahadue, S.M.; Biase, F.H.; Boldt, C.R.; Carroll, J.A.; Carvalho, W.A.; Cervelatti, E.P.; Chacko, E.; Chapin, J.E.; Cheng, Y.; Choi, J.; Colley, A.J.; DeCampos, T.A.; De Donato, M.; De Miranda Santos, I.K.F.; De Oliveira, C.J.F.; Deobald, H.; Devinoy, E.; Donohue, K.E.; Dove, P.; Eberlein, A.; Fitzsimmons, C.J.; Franzin, A.M.; Garcia, G.R.; Genini, S.; Gladney, C.J.; Grant, J.R.; Greaser, M.L.; Green, J.A.; Hadsell, D.L.; Hakimov, H.A.; Halgren, R.; Harrow, J.L.; Hart, E.A.; Hastings, N.; Hernandez, M.; Hu, Z.-L.; Iivanainen, A.; Ingham, A.; Iso-Touru, T.; Jamis, C.; Jensen, K.; Kapetis, D.; Kerr, T.; Khalil, S.S.; Khatib, H.; Kolbehdari, D.; Kumar, C.G.; Kumar, D.; Leach, R.; Lee, J.C.-M.; Li, C.; Logan, K.M.; Malinverni, R.; Marques, E.; Martin, W.F.; Martins, N.F.; Maruyama, S.R.; Mazza, R.; McLean, K.L.; Medrano, J.F.; Moreno, B.T.; More, D.D.; Muntean, C.T.; Nandakumar, H.P.; Nogueira, M.F.G.; Olsaker, I.; Pant, S.D.; Panzitta, F.; Pastor, R.C.P.; Poli, M.A.; Poslusny, N.; Rachagani, S.; Ranganathan, S.; Razpet, A.; Riggs, P.K.; Rincón, G.; Rodriguez-Osorio, N.; Rodriguez-Zas, S.L.; Romero, N.E.; Rosenwald, A.; Sando, L.; Schmutz, S.M.; Shen, L.; Sherman, L.; Southey, B.R.; Lutzow, Y.S.; Sweedler, J.V.; Tammen, I.; Telugu, B.P.V.L.; Urbanski, J.M.; Utsunomiya, Y.T.; Verschoor, C.P.; Waardenberg, A.J.; Wang, Z.; Ward, R.; WeiKard, R.; Welsh Jr., T.H.; White, S.N.; Wilming, L.G.; Wunderlich, K.R.; Yang, J.; Zhao, F.-Q. | Journal Contribution | A1 |
| 89 | 2009 | An introduction to scripting in Ruby for biologists | AERTS, Jan; Law, A. | Journal Contribution | A1 |
| 90 | 2009 | Genomic analysis reveals extensive gene duplication within the bovine TRB locus | Connelley, T.; AERTS, Jan; Law, A.; Ivan, W.I. | Journal Contribution | A1 |
| 91 | 2008 | An assessment of population structure in eight breeds of cattle using a whole genome SNP panel | McKay, S.D.; Schnabel, R.D.; Murdoch, B.M.; Matukumalli, L.K.; AERTS, Jan; Coppieters, W.; Crews, D.; Neto, E.D.; Gill, C.A.; Gao, C.; Mannen, H.; Wang, Z.; Van Tassell, C.P.; Williams, J.L.; Taylor, J.F.; Moore, S.S. | Journal Contribution | A1 |
| 92 | 2008 | Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project | Taylor, C.F.; Field, D.; Sansone, S.-A.; AERTS, Jan; Apweiler, R.; Ashburner, M.; Ball, C.A.; Binz, P.-A.; Bogue, M.; Booth, T.; Brazma, A.; Brinkman, R.R.; Michael Clark, A.; Deutsch, E.W.; Fiehn, O.; Fostel, J.; Ghazal, P.; Gibson, F.; Gray, T.; Grimes, G.; Hancock, J.M.; Hardy, N.W.; Hermjakob, H.; Julian Jr., R.K.; Kane, M.; Kettner, C.; Kinsinger, C.; Kolker, E.; Kuiper, M.; Novère, N.L.; Leebens-Mack, J.; Lewis, S.E.; Lord, P.; Mallon, A.-M.; Marthandan, N.; Masuya, H.; McNally, R.; Mehrle, A.; Morrison, N.; Orchard, S.; Quackenbush, J.; Reecy, J.M.; Robertson, D.G.; Rocca-Serra, P.; Rodriguez, H.; Rosenfelder, H.; Santoyo-Lopez, J.; Scheuermann, R.H.; Schober, D.; Smith, B.; Snape, J.; Stoeckert Jr., C.J.; Tipton, K.; Sterk, P.; Untergasser, A.; Vandesompele, J.; Wiemann, S. | Journal Contribution | A1 |
| 93 | 2007 | Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping | McKay, S.D.; Schnabel, R.D.; Murdoch, B.M.; AERTS, Jan; Gill, C.A.; Li, C.; Gao, C.; Matukumalli, L.K.; Stothard, P.; Wang, Z.; Van Tassell, C.P.; Williams, J.L.; Taylor, J.F.; Moore, S.S. | Journal Contribution | A1 |
| 94 | 2007 | Whole genome linkage disequilibrium maps in cattle | McKay, S.D.; Schnabel, R.D.; Murdoch, B.M.; Matukumalli, L.K.; AERTS, Jan; Coppieters, W.; Crews, D.; Neto, E.; Gill, C.A.; Gao, C.; Mannen, H.; Stothard, P.; Wang, Z.; Van Tassell, C.P.; Williams, J.L.; Taylor, J.F.; Moore, S.S. | Journal Contribution | A1 |
| 95 | 2007 | Extent of linkage disequilibrium in chicken | AERTS, Jan; Megens, H.J.; Veenendaal, T.; Ovcharenko, I.; Crooijmans, R.; Gordon, L.; Stubbs, L.; Groenen, M. | Journal Contribution | A1 |
| 96 | 2007 | A physical map of the bovine genome | Snelling, W.M.; CHIU, Roland; Schein, J.E.; Hobbs, M.; Abbey, C.A.; Adelson, D.L.; AERTS, Jan; Bennett, G.L.; Bosdet, I.E.; Boussaha, M.; Brauning, R.; Caetano, A.R.; Costa, M.M.; Crawford, A.M.; Dalrymple, B.P.; Eggen, A.; Everts-van der Wind, A.; Floriot, S.; Gautier, M.; Gill, C.A.; Green, R.D.; Holt, R.; Jann, O.; Jones, S.J.M.; Kappes, S.M.; Keele, J.W.; de Jong, P.J.; Larkin, D.M.; Lewin, H.A.; McEwan, J.C.; McKay, S.; Marra, M.A.; Mathewson, C.A.; Matukumalli, L.K.; Moore, S.S.; Murdoch, B.; Nicholas, F.W.; Osoegawa, K.; Roy, A.; Salih, H.; Schibler, L.; Schnabel, R.D.; Silveri, L.; Skow, L.C.; Smith, T.P.L.; Sonstegard, T.S.; Taylor, J.F.; Tellam, R.; Van Tassell, C.P.; Williams, J.L.; Womack, J.E.; Wye, N.H.; Yang, G.; Zhao, S. | Journal Contribution | A1 |
| 97 | 2006 | A second generation radiation hybrid map to aid the assembly of the bovine genome sequence | Jann, O.C.; AERTS, Jan; Jones, M.; Hastings, N.; Law, A.; McKay, S.; Marques, E.; Prasad, A.; Yu, J.; Moore, S.; Floriot, S.; Mahé, M.-F.; Eggen, A.; Silveri, L.; Negrini, R.; Milanesi, E.; Ajmone-Marsan, P.; Valentini, A.; Marchitelli, C.; Savarese, M.C.; Janitz, M.; Herwig, R.; Hennig, S.; Gorni, C.; Connor, E.E.; Sonstegard, T.S.; Smith, T.; Drögemüller, C.; Williams, J.L. | Journal Contribution | A1 |
| 98 | 2005 | MIPE - a XML format to facilitate the storage an exchange of PCR_relateds data | AERTS, Jan; Veenendaal, T | Journal Contribution | A2 |
| 99 | 2005 | Chromosomal assignment of chicken clone contigs by extending the consensus linkage map | AERTS, Jan; Veenendaal, T.; Van Der Poel, J.J.; Crooijmans, R.P.M.A.; Groenen, M.A.M. | Journal Contribution | A1 |
| 100 | 2004 | A physical map of the chicken genome | Wallis, JW; AERTS, Jan; Groenen, MAM; Crooijmans, RPMA; Layman, D; Graves, TA; Scheer, DE; Kremitzki, C; Fedele, MJ; Mudd, NK; Cardenas, M; Higginbotham, J; Carter, J; McGrane, R; Gaige, T; Mead, K; Walker, J; Albracht, D; Davito, J; Yang, SP; Leong, S; Chinwalla, A; Sekhon, M; Wylie, K; Dodgson, J; Romanov, MN; Cheng, H; de Jong, PJ; Osoegawa, K; Nefedov, M; Zhang, HB; McPherson, JD; Krzywinski, M; Schein, J; Hillier, L; Mardis, ER; Wilson, RK; Warren, WC | Journal Contribution | A1 |
| 101 | 2004 | Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution | Hillier, LW; Miller, W; Birney, E; Warren, W; Hardison, RC; Ponting, CP; Bork, P; Burt, DW; Groenen, MAM; Delany, ME; Dodgson, JB; Chinwalla, AT; Cliften, PF; Clifton, SW; Delehaunty, KD; Fronick, C; Fulton, RS; Graves, TA; Kremitzki, C; Layman, D; Magrini, V; McPherson, JD; Miner, TL; Minx, P; Nash, WE; Nhan, MN; Nelson, JO; Oddy, LG; Pohl, CS; Randall-Maher, J; Smith, SM; Wallis, JW; Yang, SP; Romanov, MN; Rondelli, CM; Paton, B; Smith, J; Morrice, D; Daniels, L; Tempest, HG; Robertson, L; Masabanda, JS; Griffin, DK; Vignal, A; Fillon, V; Jacobbson, L; Kerje, S; Andersson, L; Crooijmans, RPM; AERTS, Jan; van der Poel, JJ; Ellegren, H; Caldwell, RB; Hubbard, SJ; Grafham, DV; Kierzek, AM; McLaren, SR; Overton, IM; Arakawa, H; Beattie, KJ; Bezzubov, Y; Boardman, PE; Bonfield, JK; Croning, MDR; Davies, RM; Francis, MD; Humphray, SJ; Scott, CE; Taylor, RG; Tickle, C; Brown, WRA; Rogers, J; Buerstedde, JM; Wilson, SA; Stubbs, L; Ovcharenko, I; Gordon, L; Lucas , S; Miller, MM; Inoko, H; Shiina, T; Kaufman, J; Salomonsen, J; Skjoedt, K; Wong, GKS; Wang, J; Liu , B; Yu, J; Yang, HM; Nefedov, M; Koriabine, M; deJong , PJ; Goodstadt, L; Webber, C; Dickens, NJ; Letunic, I; Suyama, M; Torrents, D; von Mering, C; Zdobnov, EM; Makova, K; Nekrutenko, A; Elnitski, L; Eswara, P; King, DC; Yang , S; Tyekucheva, S; Radakrishnan, A; Harris, RS; Chiaromonte, F; Taylor, J; He, JB; Rijnkels, M; Griffiths-Jones, S; Ureta-Vidal, A; Hoffman, MM; Severin, J; Searle, SMJ; Law, AS; Speed, D; Waddington, D; Cheng , Z; Tuzun, E; Eichler, E; Bao , ZR; Flicek, P; Shteynberg, DD; Brent, MR; Bye, JM; Huckle, EJ; Chatterji, S; Dewey, C; Pachter, L; Kouranov, A; Mourelatos, Z; Hatzigeorgiou, AG; Paterson, AH; Ivarie, R; Brandstrom, M; Axelsson, E; Backstrom, N; Berlin, S; Webster, MT; Pourquie, O; Reymond, A; Ucla, C; Antonarakis, SE; Long, MY; Emerson, JJ; Betran, E; Dupanloup, I; Kaessmann, H; Hinrichs, AS; Bejerano, G; Furey, TS; Harte, RA; Raney, B; Siepel, A; Kent, WJ; Haussler, D; Eyras, E; Castelo, R; Abril, JF; Castellano, S; Camara, F; Parra, G; Guigo, R; Bourque, G; Tesler, G; Pevzner, PA; Smit , A; Fulton, LA; Mardis, ER; Wilson , RK | Journal Contribution | A1 |
| 102 | 2004 | POSA: Perl objects for DNA sequencing data analysis | AERTS, Jan; Jungerius, BJ; Groenen, MA | Journal Contribution | A1 |
| 103 | 2003 | Integration of chicken genomic resources to enable whole-genome sequencing | AERTS, Jan; Crooijmans, R; Cornelissen, S; Hemmatian, K; Veenendaal, T; Jaadar, A; van der Poel, J; Fillon, V; Vignal, A; Groenen, M | Journal Contribution | A1 |
| 104 | 2002 | Data mining of public SNP databases for the selection of intragenic SNPs | AERTS, Jan; Wetzels, Y; Cohen, N; Aerssens, J | Journal Contribution | A1 |
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