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http://hdl.handle.net/1942/14477| Title: | R Package PamGeneMixed: reprocessing and Modeling Kinase Activity Profiles in PamChip Data | Authors: | THILAKARATHNE, Pushpike SHKEDY, Ziv LIN, Dan |
Issue Date: | 2012 | Abstract: | This package contains the functions that can be used to analyze the PamChip microarray data. The package is mainly useful in fitting semi-parametric mixed effects models while accommodating various types of mean structures and correlation structures present in Kinase activity profiling experiments. The package can be used to visualize, cleaning Pam Chip data. And also it can be used in model fitting, velocity estimating, and testing the estimated velocities between the groups. The PamGeneMixed package is built up as a software implementation for the paper titled The Use of Semi-parametric Mixed Models to Analyze PamChip Peptide Array Data: an Application to an Oncology Experiment which is published in Bioinformatics (2011). | Keywords: | Semi-parametric mixed models; Smoothing splines; Thin plate regressions; Kinase Activity Profiles | Document URI: | http://hdl.handle.net/1942/14477 | Link to publication/dataset: | http://cran.r-project.org/web/packages/PamGeneMixed/index.html | Rights: | PamGeneMixed Copyright (c) 2012 by Pushpike Thilakarathne. This R library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version. This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. | Category: | O | Type: | Other |
| Appears in Collections: | Research publications |
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