Please use this identifier to cite or link to this item: http://hdl.handle.net/1942/25832
Full metadata record
DC FieldValueLanguage
dc.contributor.advisorHENS, Niel-
dc.contributor.advisorStaedke, Sarah-
dc.contributor.advisorABRAMS, Steven-
dc.contributor.authorMUGENYI, Levicatus-
dc.date.accessioned2018-04-09T11:58:59Z-
dc.date.available2018-04-09T11:58:59Z-
dc.date.issued2018-
dc.identifier.urihttp://hdl.handle.net/1942/25832-
dc.description.abstractIn this thesis, we used malaria data from Ugandan children to estimate malaria-related mortality and determinants. We derived a link between mathematical and statistical models enabling the estimation of the malaria prevalence and force of infection (FOI) by assuming an SIS compartmental model and the generalised linear mixed model (GLMM). Finally we developed a methodology to account for outcome-dependent sampling (ODS) using a joint model. The results indicated that malaria is the leading cause of death among children who died when aged 29 days to 14 years in some parts in Uganda. The mortality hazard was higher among children who had fever or those that were admitted in the health centres or those who died on the way to seek care. The malaria prevalence and FOI were highest among children aged 5-10 years in areas with high transmission intensities and were highest among children aged about 1 year in areas of low transmission intensities. Children who were previously asymptomatic had higher hazards of being re-infected with malaria compared to their counterparts who were symptomatic. Heterogeneity in malaria infection was quantified and was highest between households compared to between household members. The simulation study indicated that ignoring ODS could lead to biased estimates which would later lead to incorrect assessment of intervention strategies.-
dc.description.sponsorshipVLIR, and NIH-
dc.language.isoen-
dc.subject.othermalaria; SIS; force of infection; generalised linear mixed model; competing risks analysis; outcome-dependent sampling-
dc.titleEstimating Infectious Disease Parameters for the Transmission of Malaria in Ugandan Children-
dc.typeTheses and Dissertations-
local.format.pages133-
local.bibliographicCitation.jcatT1-
dc.description.notesThis thesis was completed with financial support from VLIR. The phd was a collaboration between Hasselt University-Belgium and Infectious Diseases Research Collaboration (IDRC)-Uganda.-
dc.relation.references[1] Aguas R, White LJ, Snow RW, Gomes MGM. Prospects for malaria eradication in sub-Saharan Africa. Plos One. 2008;3(3). [2] Akaike H. New look at statistical-model identification. Ieee Transactions on Automatic Control. 1974;Ac19(6):716-23. [3] Alberti C, Timsit JF, Chevret S. Survival analysis - the log rank test. Revue Des Maladies Respiratoires. 2005;22(5):829-32. [4] Ambroisethomas P. Diagnosis and Seroepidemiologic Study of Malaria by Immunofluorescence, Indirect Hemagglutination and Immuno-Enzymology. Israel Journal of Medical Sciences. 1978;14(6):690-1. [5] Andersen PK, Geskus RB, de Witte T, Putter H. Competing risks in epidemiology: possibilities and pitfalls. International Journal of Epidemiology. 2012;41(3):861-70. [6] Bai XF, Tsiatis AA. A log rank type test in observational survival studies with stratified sampling. Lifetime Data Analysis. 2016;22(2):280-98. [7] Baiden F, Bawah A, Biai S, Binka F, Boerma T, Byass P, Chandramohan D, Chatterji S, Engmann C, Greet D, Jakob R, Kahn K, Kunii O, Lopez AD, Murray CJ, Nahlen B, Rao C, Sankoh O, Setel PW, Shibuya K, Soleman N, Wright L, Yang G. Setting international standards for verbal autopsy. Bulletin of the World Health Organization. 2007;85(8):570-1. [8] Bekessy A, Molineaux L, Storey J. Estimation of incidence and recovery rates of Plasmodium falciparum parasitaemia from longitudinal data. Bulletin of the World Health Organization. 1976;54(6):685-93.[9] Boor D. A practical guide to splines. New York: Springer Verlag; 1978. [10] Box GEP, Draper NR. Empirical Model-Building and Response Surfaces. Wiley, 1987. [11] Bretscher MT, Maire N, Chitnis N, Felger I, Owusu-Agyei S, Smith T. The distribution of Plasmodium falciparum infection durations. Epidemics. 2011;3(2):109- 18. [12] Byass P, Herbst K, Fottrell E, Ali MM, Odhiambo F, Amek N, Hamel MJ, Laserson KF, Kahn K, Kabudula C, Mee P, Bird J, Jakob R, Sankoh O, Tollman SM. Comparing verbal autopsy cause of death findings as determined by physician coding and probabilistic modelling: a public health analysis of 54 000 deaths in Africa and Asia. Journal of Global Health. 2015;5(1):010402. [13] Boyce MR, O’Meara WP. Use of malaria RDTs in various health contexts across sub-Saharan Africa: a systematic review. BMC Public Health. 2017;17(1):470. [14] CDC Website https://www.cdc.gov/malaria/about/biology/. Access date: December 20, 2016 [15] Coleman RE, Sattabongkot J, Promstaporm S, Maneechai N, Tippayachai B, Kengluecha A, Rachapaew N, Zollner G, Miller RS, Vaughan JA, Thimasarn K, Khuntirat B. Comparison of PCR and microscopy for the detection of asymptomatic malaria in a Plasmodium falciparum/vivax endemic area in Thailand. Malaria Journal. 2006;5. [16] Coleman RE, Sattabongkot J, Promstaporm S, Maneechai N, Tippayachai B, Kengluecha A, Rachapaew N, Zollner G, Miller RS, Vaughan JA, Thimasarn K, Khuntirat B. Comparison of PCR and microscopy for the detection of asymptomatic malaria in a Plasmodium falciparum/vivax endemic area in Thailand. Malaria Journal. 2006;5. [17] Corran P, Coleman P, Riley E, Drakeley C. Serology: a robust indicator of malaria transmission intensity. Trends Parasitol. 2007;23(12):575-82. [18] Coutinho FAB, Massad E, Lopez LF, Burattini MN, Struchiner CJ, AzevedoNeto RS. Modelling heterogeneities in individual frailties in epidemic models. Mathematical and Computer Modelling. 1999;30(1-2):97-115. [19] Cox DR. Regression Models and Life-Tables. Journal of the Royal Statistical Society Series B-Statistical Methodology. 1972;34(2):187.[20] de Smith MJ. Statistical Analysis Handbook - a web-based statistics resource. Winchelsea , UK.: The Winchelsea Press; 2015. [21] Doolan DL, Dobano C, Baird JK. Acquired immunity to malaria. Clin Microbiol Rev. 2009;22(1):13-36. [22] Egger JR, Ooi EE, Kelly DW, Woolhouse ME, Davies CR, Coleman PG. Reconstructing historical changes in the force of infection of dengue fever in Singapore: implications for surveillance and control. Bulletin of the World Health Organization. 2008;86(3):187-96. [23] Faes C, Hens N, Aerts M, Shkedy Z, Geys H, Mintiens K, Laevens H, Boelaert F. Estimating herd-specific force of infection by using random-effects models for clustered binary data and monotone fractional polynomials. Journal of the Royal Statistical Society Series C-Applied Statistics. 2006;55:595-613. [24] Felger I, Maire M, Bretscher MT, Falk N, Tiaden A, Sama W, Beck HP, OwusuAgyei S, Smith TA. The dynamics of natural Plasmodium falciparum infections. Plos One. 2012;7(9):e45542. [25] Fine JP, Gray RJ. A proportional hazards model for the subdistribution of a competing risk. Journal of the American Statistical Association. 1999;94(446):496- 509. [26] Gallup JL, Sachs JD. The economic burden of malaria. American Journal of Tropical Medicine and Hygiene. 2001;64(1-2):85-96. [27] Gentilini M, Richardlenoble D, Reviron J, Farragi M. Serological Diagnosis of Malaria by and Indirect Immunofluorescence Test Using Pl Bergher Antigen. Revue Francaise De Transfusion. 1976;19(2):363-7. [28] Geskus RB. Data Analysis with Competing Risks and Intermediate States. Series CHCB, editor: Chapman and Hall/CRC; 2015. [29] Ghai RR, Thurber MI, El Bakry A, Chapman CA, Goldberg TL. Multi-method assessment of patients with febrile illness reveals over-diagnosis of malaria in rural Uganda. Malaria Journal. 2016;15. [30] Goel MK, Khanna P, Kishore J. Understanding survival analysis: Kaplan-Meier estimate. International Journal of Ayurveda Research. 2010;1(4):274-8. [31] Goldstein E, Paur K, Fraser C, Kenah E, Wallinga J, Lipsitch M. Reproductive numbers, epidemic spread and control in a community of households. Mathematical Biosciences. 2009;221(1):11-25. [32] Gray RJ. A Class of K-Sample Tests for Comparing the Cumulative Incidence of a Competing Risk. Annals of Statistics. 1988;16(3):1141-54. [33] Halpern J, Brown BW, Jr. Designing clinical trials with arbitrary specification of survival functions and for the log rank or generalized Wilcoxon test. Contemporary Clinical Trials. 1987;8(3):177-89. [34] Hastie T, Tibshirani R. Generalized aditive models. London: Chapman and Hall; 1990. [35] Hens N, Aerts M, Faes C, Shkedy Z, Lejeune O, Van Damme P, Beutels P. Seventy-five years of estimating the force of infection from current status data. Epidemiology and Infection. 2010;138(6):802-12. [36] Hens N., Shkedy Z., Aerts M., Faes C., Van Damme P., P. B. Modeling infectious disease parameters based on serological and social contact data: A modern statistical perspective: Springer; 2012. [37] Hery, Alexandre. The Uganda poverty assessment report 2016. Uganda: Artfield Graphics Ltd; 2016. [38] Howden BP, Vaddadi G, Manitta J, Grayson ML. Chronic falciparum malaria causing massive splenomegaly 9 years after leaving an endemic area. Medical Journal of Australia. 2005;182(4):186-8. [39] Jeanne LD, Berry A, Dutoit E, Leclerc F, Beaudou J, Leteurtre S, Camus D, Benoit-Vical F. Molecular method for the diagnosis of imported pediatric malaria. Medecine Et Maladies Infectieuses. 2010;40(2):115-8. [40] Jegede AS, Oshiname FO, Sanou AK, Nsungwa-Sabiiti J, Ajayi IO, Siribie M, Afonne C, Serme L, Falade CO. Assessing Acceptability of a Diagnostic and Malaria Treatment Package Delivered by Community Health Workers in MalariaEndemic Settings of Burkina Faso, Nigeria, and Uganda. Clinical Infectious Diseases. 2016;63(suppl 5):S306-S11. [41] Kain KC, Harrington MA, Tennyson S, Keystone JS. Imported malaria: Prospective analysis of problems in diagnosis and management. Clinical Infectious Diseases. 1998;27(1):142-9.[42] Kamya MR, Arinaitwe E, Wanzira H, Katureebe A, Barusya C, Kigozi SP, Kilama M, Tatem AJ, Rosenthal PJ, Drakeley C, Lindsay SW, Staedke SG, Smith DL, Greenhouse B, Dorsey G. Malaria transmission, infection, and disease at three sites with varied transmission intensity in Uganda: implications for malaria control. American Journal of Tropical Medicine and Hygiene. 2015;92(5):903-12. [43] Kaplan EL, Meier P. Nonparametric-Estimation from Incomplete Observations. Journal of the American Statistical Association. 1958;53(282):457-81. [44] Kass RE, Raftery AE. Bayes Factors. Journal of the American Statistical Association. 1995;90(430):773-95. [45] Katrak S, Murphy M, Nayebare P, Rek J, Smith M, Arinaitwe E, Nankabirwa JI, Kamya M, Dorsey G, Rosenthal PJ, Greenhouse B. Performance of Loop-Mediated Isothermal Amplification for the Identification of Submicroscopic Plasmodium falciparum Infection in Uganda. Am J Trop Med Hyg. 2017;97(6):1777-81. [46] Katureebe A, Zinszer K, Arinaitwe E, Rek J, Kakande E, Charland K, Kigozi R, Kilama M, Nankabirwa J, Yeka A, Mawejje H, Mpimbaza A, Katamba H, Donnelly MJ, Rosenthal PJ, Drakeley C, Lindsay SW, Staedke SG, Smith DL, Greenhouse B, Kamya MR, Dorsey G. Measures of Malaria Burden after Long-Lasting Insecticidal Net Distribution and Indoor Residual Spraying at Three Sites in Uganda: A Prospective Observational Study. Plos Medicine. 2016;13(11):e1002167. [47] Keeling MJ, Rohan P. Modeling infectious diseases in humans and animals. Princeton University Press, 41 William Street, Princeton, New Jersey 08540, 2008. [48] Keiding N. Age-Specific Incidence and Prevalence - a Statistical Perspective. Journal of the Royal Statistical Society Series a-Statistics in Society. 1991;154:371- 412. [49] Kelly-Hope LA, McKenzie FE. The multiplicity of malaria transmission: a review of entomological inoculation rate measurements and methods across sub-Saharan Africa. Malaria Journal. 2009;8. [50] Kilama M, Smith DL, Hutchinson R, Kigozi R, Yeka A, Lavoy G, Kamya MR, Staedke SG, Donnelly MJ, Drakeley C, Greenhouse B, Dorsey G, Lindsay SW. Estimating the annual entomological inoculation rate for Plasmodium falciparum transmitted by Anopheles gambiae s.l. using three sampling methods in three sites in Uganda. Malaria Journal. 2014;13(1):111. [51] Klein JP, Andersen PK. Regression modeling of competing risks data based on pseudovalues of the cumulative incidence function. Biometrics. 2005;61(1):223-9. [52] Laoboonchai A, Kawamoto F, Thanoosingha N, Kojima S, Scott Miller RR, Kain KC, Wongsrichanalai C. PCR-based ELISA technique for malaria diagnosis of specimens from Thailand. Tropical Medicine and International Health. 2001;6(6):458-62. [53] Lee Y, Nelder JA, Pawitan Y. Generalized Linear Models with Random Effects: Unified Analysis via H-likelihood. London: Chapman & Hall/CRC; 2006. [54] Liang KY, Zeger SL. Longitudinal Data-Analysis Using Generalized LinearModels. Biometrika. 1986; 73: 13-22. [55] Lipsitz SR, Fitzmaurice GM, Ibrahim JG, Gelber R, Lipshultz S. Parameter estimation in longitudinal studies with outcome-dependent follow-up. Biometrics. 2002;58(3):621-30. [56] Logan BR, Zhang MJ, Klein JP. Regression models for hazard rates versus cumulative incidence probabilities in hematopoietic cell transplantation data. Biology of Blood and Marrow Transplantation. 2006;12(1):107-12. [57] Maiga AW, Fofana B, Sagara I, Dembele D, Dara A, Traore OB, Toure S, Sanogo K, Dama S, Sidibe B, Kone A, Thera MA, Plowe CV, Doumbo OK, Djimde AA. No evidence of delayed parasite clearance after oral artesunate treatment of uncomplicated falciparum malaria in Mali. American Journal of Tropical Medicine and Hygiene. 2012;87(1):23-8. [58] Mathison BA, Pritt BS. Update on Malaria Diagnostics and Test Utilization. Journal of Clinical Microbiology. 2017;55(7):2009-17. [59] McMorrow ML, Aidoo M, Kachur SP. Malaria rapid diagnostic tests in elimination settings–can they find the last parasite? Clin Microbiol Infect. 2011;17(11):1624-31. [60] Miller LH, Ackerman HC, Su XZ, Wellems TE. Malaria biology and disease pathogenesis: insights for new treatments. Nature Medicine 2013;19(2):156-67. [61] Molenberghs G, Verbeke G. Models for discrete longitudinal data. New York: Springer, Series in Statistics; 2005. [62] Mpimbaza A, Filler S, Katureebe A, Kinara SO, Nzabandora E, Quick L, Ratcliffe A, Wabwire-Mangen F, Chandramohan D, Staedke SG. Validity of verbal autopsy procedures for determining malaria deaths in different epidemiological settings in Uganda. Plos One. 2011;6(10):e26892. [63] Mpimbaza A, Filler S, Katureebe A, Quick L, Chandramohan D, Staedke SG. Verbal Autopsy: Evaluation of Methods to Certify Causes of Death in Uganda. Plos One. 2015;10(6):e0128801. [64] Mueller I, Schoepflin S, Smith TA, Benton KL, Bretscher MT, Lin E, Kiniboro B, Zimmerman PA, Speed TP, Siba P, Felger I. Force of infection is key to understanding the epidemiology of Plasmodium falciparum malaria in Papua New Guinean children. Proceedings of the National Academy of Sciences of the United States of America. 2012;109(25):10030-5. [65] Mugenyi L, Abrams S, Hens N. Estimating age-time-dependent malaria force of infection accounting for unobserved heterogeneity. Epidemiology and Infection. 2017:1-18. [66] Musca SC, Kamiejski R, Nugier A, Meot A, Er-Rafiy A, Brauer M. Data with hierarchical structure: impact of intraclass correlation and sample size on type-I error. Frontiers in Psychology. 2011;2:74. [67] Ndiaye JL, Faye B, Gueye A, Tine R, Ndiaye D, Tchania C, Ndiaye I, Barry A, Cisse B, Lameyre V, Gaye O. Repeated treatment of recurrent uncomplicated Plasmodium falciparum malaria in Senegal with fixed-dose artesunate plus amodiaquine versus fixed-dose artemether plus lumefantrine: a randomized, open-label trial. Malaria Journal. 2011;10:237. [68] Ndyomugyenyi R, Magnussen P, Lal S, Hansen K, Clarke SE. Appropriate targeting of artemisinin-based combination therapy by community health workers using malaria rapid diagnostic tests: findings from randomized trials in two contrasting areas of high and low malaria transmission in south-western Uganda. Tropical Medicine & International Health. 2016;21(9):1157-70. [69] Nichols EK, Byass P, Chandramohan D, Clark SJ, Flaxman AD, Jakob R, Leitao J, Maire N, Rao C, Riley I, Setel PW, Group WHOVAW. The WHO 2016 verbal autopsy instrument: An international standard suitable for automated analysis by InterVA, InSilicoVA, and Tariff 2.0. Plos Medicine. 2018;15(1):e1002486. [70] Noedl H, Yingyuen K, Laoboonchai A, Fukuda M, Sirichaisinthop J, Miller RS. Sensitivity and specificity of an antigen detection ELISA for malaria diagnosis. American Journal of Tropical Medicine and Hygiene. 2006;75(6):1205-8. [71] Onori E, Grab B. Quantitative Estimates of the evolution of a malaria epidemic in Turkey If remedial measures had not been applied. Bulletin of the World Health Organization. 1980;58(2):321-6. [72] Onori E, Grab B. Indicators for the forecasting of malaria epidemics. Bulletin of the World Health Organization. 1980;58(1):91-8. [73] Orth H, Jensen BO, Holtfreter MC, Kocheril SJ, Mallach S, MacKenzie C, Muller-Stover I, Henrich B, Imwong M, White NJ, Haussinger D, Richter J. Plasmodium knowlesi infection imported to Germany, January 2013. Euro Surveill. 2013;18(40). [74] Paola R, Agus S, Marie R. bshazard: A Flexible Tool for Nonparametric Smoothing of the Hazard Function. The R Journal. 2014;6/2. [75] Phillips MA, Burrows JN, Manyando C, van Huijsduijnen RH, Van Voorhis WC, Wells TNC. Malaria. Nature Reviews Disease Primers 2017;3:17050. [76] Pintilie M. An Introduction to Competing Risks Analysis. Revista Espanola De Cardiologia. 2011;64(7):599-605. [77] Pintilie M. Analysing and interpreting competing risk data. Statistics in Medicine. 2007;26(6):1360-7. [78] Poschl B, Waneesorn J, Thekisoe O, Chutipongvivate S, Karanis P. Comparative diagnosis of malaria infections by microscopy, nested PCR, and LAMP in northern Thailand. American Journal of Tropical Medicine and Hygiene. 2010;83(1):56-60. [79] President’s Malaria Initiative Report 2016, Uganda Malaria Operational Plan Financial Year 2016. [80] Pull JH, Grab B. A simple epidemiological model for evaluating the malaria inoculation rate and the risk of infection in infants. Bulletin of the World Health Organization. 1974;51(5):507-16. [81] Rich JT, Neely JG, Paniello RC, Voelker CCJ, Nussenbaum B, Wang EW. A practical guide to understanding Kaplan-Meier curves. Otolaryngology-Head and Neck Surgery. 2010;143(3):331-6. [82] Riley EM, Wagner GE, Akanmori BD, Koram KA. Do maternally acquired antibodies protect infants from malaria infection? Parasite Immunology. 2001;23(2):51-9. [83] Rizopoulos D, Verbeke G, Molenberghs G. Shared parameter models under random effects misspecification. Biometrika. 2008;95(1):63-74. [84] Ross R. Application of the theory of probabilities to the study of priori pathometry In: proceedings of the Royal Society of Landon Series A, containing papers of a mathematical and physical character. 1916;92. [85] Ross R. Report on the prevention of malaria in Mauritius. New York: E. P. Dutton & Company; 1908. [86] Ryu D, Sinha D, Mallick B, Lipsitz SL, Lipshultz S. Longitudinal Studies With Outcome-Dependent Follow-up: Models and Bayesian Regression. Journal of the American Statistical Association. 2007;102:952-67. [87] Sama W, Dietz K, Smith T. Distribution of survival times of deliberate Plasmodium falciparum infections in tertiary syphilis patients. Transactions of the Royal Society of Tropical Medicine and Hygiene. 2006;100(9):811-6. [88] Schwarz GE. Estimating the dimension of a model. Annals of Statistics. 1978;6 (2):461-4. [89] Scrucca L, Santucci A, Aversa F. Competing risk analysis using R: an easy guide for clinicians. Bone Marrow Transplant. 2007;40(4):381-7. [90] Scrucca L, Santucci A, Aversa F. Regression modeling of competing risk using R: an in depth guide for clinicians. Bone Marrow Transplant. 2010;45(9):1388-95. [91] Shah JA, Emina JB, Eckert E, Ye Y. Prompt access to effective malaria treatment among children under five in sub-Saharan Africa: a multi-country analysis of national household survey data. Malar J. 2015;14:329. [92] Shkedy Z, Aerts M, Molenberghs G, Beutels P, Van Damme P. Modelling agedependent force of infection from prevalence data using fractional polynomials. Statistics in Medicine. 2006;25(9):1577-91. [93] Shkedy Z, Aerts M, Molenberghs G, Beutels P, Van Damme P. Modelling forces of infection by using monotone local polynomials. Journal of the Royal Statistical Society Series C-Applied Statistics. 2003;52:469-85. [94] Singer B, Cohen JE. Estimating malaria incidence and recovery rates from panel surveys. Mathematical Biosciences. 1980;49:273-305. [95] Smieja J, editor Advantages and pitfalls of mathematical modelling used for validation of biological hypotheses. 7th IFAC Symposium on Modelling and Control in Biomedical Systems; 2009; Aalborg, Denmark. [96] Smith DL, Battle KE, Hay SI, Barker CM, Scott TW, McKenzie FE. Ross, Macdonald, and a theory for the dynamics and control of mosquito-transmitted pathogens. Plos Pathogens. 2012;8(4). [97] Smith DL, Drakeley CJ, Chiyaka C, Hay SI. A quantitative analysis of transmission efficiency versus intensity for malaria. Nature Communications. 2010;1. [98] Smith DL, Dushoff J, Snow RW, Hay SI. The entomological inoculation rate and Plasmodium falciparum infection in African children. Nature. 2005;438(7067):492- 5. [99] Smith DL, McKenzie FE. Statics and dynamics of malaria infection in Anopheles mosquitoes. Malaria Journal. 2004;3:13. [100] Smith TA. Estimation of heterogeneity in malaria transmission by stochastic modelling of apparent deviations from mass action kinetics. Malaria Journal 2008; 7: 12. [101] Snow RW, Armstrong JR, Forster D, Winstanley MT, Marsh VM, Newton CR, Waruiru C, Mwangi I, Winstanley PA, Marsh K. Childhood deaths in Africa: uses and limitations of verbal autopsies. Lancet. 1992;340(8815):351-5. [102] Soleman N, Chandramohan D, Shibuya K. Verbal autopsy: current practices and challenges. Bulletin of the World Health Organization. 2006;84(3):239-45. [103] Staedke SG, Maiteki-Sebuguzi C, DiLiberto DD, Webb EL, Mugenyi L, Mbabazi E, Gonahasa S, Kigozi SP, Willey BA, Dorsey G, Kamya MR, Chandler CI. The Impact of an Intervention to Improve Malaria Care in Public Health Centers on Health Indicators of Children in Tororo, Uganda (PRIME): A Cluster-Randomized Trial. Am J Trop Med Hyg. 2016;95(2):358-67. [104] Streatfield PK, Khan WA, Bhuiya A, Hanifi SM, Alam N, Diboulo E, Sie A, Ye M, Compaore Y, Soura AB, Bonfoh B, Jaeger F, Ngoran EK, Utzinger J, Melaku YA, Mulugeta A, Weldearegawi B, Gomez P, Jasseh M, Hodgson A, Oduro A, Welaga P, Williams J, Awini E, Binka FN, Gyapong M, Kant S, Misra P, Srivastava R, Chaudhary B, Juvekar S, Wahab A, Wilopo S, Bauni E, Mochamah G, Ndila C, Williams TN, Desai M, Hamel MJ, Lindblade KA, Odhiambo FO, Slutsker L, Ezeh A, Kyobutungi C, Wamukoya M, Delaunay V, Diallo A, Douillot L, Sokhna C, Gomez-Olive FX, Kabudula CW, Mee P, Herbst K, Mossong J, Chuc NT, Arthur SS, Sankoh OA, Tanner M, Byass P. Malaria mortality in Africa and Asia: evidence from INDEPTH health and demographic surveillance system sites. Global Health Action. 2014;7:25369. [105] Talisuna AO, Noor AM, Okui AP, Snow RW. The past, present and future use of epidemiological intelligence to plan malaria vector control and parasite prevention in Uganda. Malaria Journal. 2015;14. [106] Tan KS, French B, Troxel AB. Regression modeling of longitudinal data with outcome-dependent observation times: extensions and comparative evaluation. Statistics in Medicine. 2014;33(27):4770-89. [107] Therneau TM, Grambsch, Patricia M. Modeling Survival Data: Extending the Cox Model. New York: Springer; 2000. [108] Trampuz A, Jereb M, Muzlovic I, Prabhu RM. Clinical review: Severe malaria. Critical Care. 2003;7(4):315-23. [109] Uganda Bureau of Statistics 2016, The National Population and Housing Census 2014 - Main Report, Kampala, Uganda [110] Uganda Ministry of Health, Annual Health Sector Performance Report, Financial Year 2014/2015 [111] Vaupel JW, Manton KG, Stallard E. The impact of heterogeneity in individual frailty on the dynamics of mortality. Demography. 1979;16(3):439-54. [112] Verbeke G, Molenberghs G. Linear mixed models for longitudinal data. Springer. 2000. [113] Von Fricken ME, Weppelmann TA, Lam B, Eaton WT, Schick L, Masse R, Beau De Rochars MV, Existe A, Larkin J, 3rd, Okech BA. Age-specific malaria seroprevalence rates: a cross-sectional analysis of malaria transmission in the Ouest and Sud-Est departments of Haiti. Malaria Journal. 2014;13:361. [114] Walldorf JA, Cohee LM, Coalson JE, Bauleni A, Nkanaunena K, KapitoTembo A, Seydel KB, Ali D, Mathanga D, Taylor TE, Valim C, Laufer MK. School-Age Children Are a Reservoir of Malaria Infection in Malawi. Plos One. 2015;10(7):e0134061. [115] Wang J, Xie H, Fisher JH. Multilevel Models. Applications Using SAS. Library of Congress Cataloging-in-Publication Data: Mathematics Subject Classification. 2010. [116] White IM, Thompson R, Brotherstone S. Genetic and environmental smoothing of lactation curves with cubic splines. Journal of Dairy Science. 1999;82(3):632-8. [117] White MT, Griffin JT, Drakeley CJ, Ghani AC. Heterogeneity in malaria exposure and vaccine response: implications for the interpretation of vaccine efficacy trials. Malaria Journal. 2010;9. [118] White NJ. Plasmodium knowlesi: the fifth human malaria parasite. Clin Infect Dis. 2008;46(2):172-3. [119] White NJ, Pukrittayakamee S, Hien TT, Faiz MA, Mokuolu OA, Dondorp AM. Malaria. Lancet. 2014;383(9918):723-35. [120] WHO. Global Technical Strategy for Malaria 2016 - 2030. United Kingdom; 2015. [121] WHO. Scaling up Diagnostic Testing, Treatment and Surveillance for Malaria. Geneva; 2012. [122] WHO. World Malaria Report 2016. Geneva: Licence: CC BY-NC-SA 3.0 IGO; 2016 [123] WHO. World Malaria Report 2017. Geneva: Licence: CC BY-NC-SA 3.0 IGO; 2017. [124] Wilson ML. Laboratory Diagnosis of Malaria Conventional and Rapid Diagnostic Methods. Archives of Pathology & Laboratory Medicine. 2013;137(6):805-11. [125] Worrall E, Basu S, Hanson K. Is malaria a disease of poverty? A review of the literature. Tropical Medicine and International Health. 2005;10(10):1047-59. [126] Wu S, Crespi CM, Wong WK. Comparison of methods for estimating the intraclass correlation coefficient for binary responses in cancer prevention cluster randomized trials. Contemporary Clinical Trials. 2012;33(5):869-80. [127] Wulfsohn MS, Tsiatis AA. A joint model for survival and longitudinal data measured with error. Biometrics. 1997;53(1):330-9. [128] Zhang D., Lin X. Variance component testing in generalized linear mixed models for longitudinal/clustered data and other related topics. in: Dunson D.B. (eds) Random effect and latent variable model selection. lecture notes in statistics. New York: Springer. 2008;192.-
local.type.refereedNon-Refereed-
local.type.specifiedPhd thesis-
item.contributorMUGENYI, Levicatus-
item.fulltextWith Fulltext-
item.accessRightsOpen Access-
item.fullcitationMUGENYI, Levicatus (2018) Estimating Infectious Disease Parameters for the Transmission of Malaria in Ugandan Children.-
Appears in Collections:PhD theses
Research publications
Files in This Item:
File Description SizeFormat 
Levicatus Mugenyi_Thesis 09April18.pdf2.92 MBAdobe PDFView/Open
Show simple item record

Page view(s)

60
checked on Sep 7, 2022

Download(s)

18
checked on Sep 7, 2022

Google ScholarTM

Check


Items in DSpace are protected by copyright, with all rights reserved, unless otherwise indicated.