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Title: | First high-quality draft genome of Ochrobactrum haematophilum P6BS-III, a highly glyphosate-tolerant strain isolated from agricultural soil in Argentina | Authors: | MASSOT, Francisco GKOREZIS, Panos McAmmond, Breanne D'HAEN, Jan Van Hamme, Jonathan Merini, Luciano J. VANGRONSVELD, Jaco THIJS, Sofie |
Issue Date: | 2019 | Publisher: | SPRINGER HEIDELBERG | Source: | 3 BIOTECH, 9(3) (Art N° 74) | Abstract: | We report here on a high-quality draft genome sequence of Ochrobactrum haematophilum strain P6BS-III (DSM 106071), a Gram negative, non-sporulating bacterium isolated from a pastureland (Buenos Aires province, Argentina) which had been chronically exposed to the herbicide glyphosate. The genome of 5.25Mb with a DNA G+C content of 56.63% size was estimated to contain 5,291 protein coding genes and 57 RNA genes. Genome analysis revealed the presence of the phn operon, which is involved in the phosphonate degradation pathway, and a class II 5-enolpyruvylshikimate-3-phosphate synthase (EPSP) that confers tolerance to glyphosate. Genes related to plant growth promotion traits are also present, and include genes for phosphorus metabolism, calcium phosphate and phytate solubilization, siderophore production, organic acid biosynthesis and indole acetic acid (IAA) production. | Notes: | [Massot, Francisco; Gkorezis, Panagiotis; Vangronsveld, Jaco; Thijs, Sofie] Hasselt Univ, Dept Biol, Ctr Environm Sci, Diepenbeek, Belgium. [Massot, Francisco] Univ Buenos Aires, Fac Farm & Bioquim, Dept Microbiol Inmunol Biotecnol & Genet, Catedra Biotecnol, Buenos Aires, DF, Argentina. [Massot, Francisco] Univ Buenos Aires, CONICET, Inst Nanobiotecnol NANOBIOTEC, Buenos Aires, DF, Argentina. [McAmmond, Breanne; Van Hamme, Jonathan] Thompson Rivers Univ, Dept Biol Sci, Kamloops, BC, Canada. [Merini, Luciano J.] Consejo Nacl Invest Cient & Tecn, INTA, EEA Anguil, Lab Malezas & Herbicidas, La Pampa, Argentina. [d'Haen, Jan] Hasselt Univ, IMEC, IMO, Inst Mat Res, Diepenbeek, Belgium. | Keywords: | Glyphosate; Ochrobactrum haematophilum; 5-Enolpyruvylshikimate-3-phosphate synthase; Soil contamination; Plant growth promotion;Glyphosate; Ochrobactrum haematophilum; 5-Enolpyruvylshikimate-3-phosphate synthase; Soil contamination; Plant growth promotion | Document URI: | http://hdl.handle.net/1942/29023 | ISSN: | 2190-572X | e-ISSN: | 2190-5738 | DOI: | 10.1007/s13205-019-1606-y | ISI #: | 000458355000003 | Category: | A1 | Type: | Journal Contribution | Validations: | ecoom 2020 |
Appears in Collections: | Research publications |
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File | Description | Size | Format | |
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10.1007@s13205-019-1606-y.pdf Restricted Access | Published version | 2.21 MB | Adobe PDF | View/Open Request a copy |
rizzardo2018.pdf | Peer-reviewed author version | 108.05 kB | Adobe PDF | View/Open |
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