SUMO: an R package for simulating multi-omics data for methods development and testing

Abstract

Motivation Insights from integrative multi-omics analyses have fueled demand for innovative computational methods and tools in multi-omics research. However, the scarcity of multi-omics datasets with user-defined signal structures hinders the evaluation of these newly developed tools. SUMO (SimUlating Multi-Omics), an open-source R package, was developed to address this gap by enabling the generation of high-quality factor analysis-based datasets with full control over the dataset's structure such as latent structures, noise, and complexity. Users can configure datasets with distinct and/or shared non-overlapping latent factors, enabling flexible and precise control over the signal structures. Consequently, SUMO allows reproducible testing and validation of methods, fostering methodological innovation.Availability and implementation The SUMO R package is freely available and accessible on the Comprehensive R Archive Network https://doi.org/10.32614/CRAN.package.SUMO and on GitHub https://github.com/lucp12891/SUMO.git under CC-BY 4.0 license.