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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 1 | 2022 | Statistical detection of synergy: New methods and a comparative study | THAS, Olivier; Tourny, Annelies; Verbist, Bie; Hawinkel, Stijn; Nazarov, Maxim; Mutambanengwe, Kathy; BIJNENS, Luc | Journal Contribution | A1 |
| 2 | 2021 | The safety and efficacy of botulinum toxin type A treatment in neurogenic detrusor overactivity and idiopathic overactive bladder: A systematic review and meta-analysis of prospective, randomized, double-blinded, placebo-controlled clinical trials | Bijnens, A; BIJNENS, Luc; Van Koeveringe, G. A.; Vrijens, D. M. J. | Journal Contribution | M |
| 3 | 2020 | Sequence count data are poorly fit by the negative binomial distribution | Hawinkel, Stijn; Rayner, J. C. W.; BIJNENS, Luc; THAS, Olivier | Journal Contribution | A1 |
| 4 | 2020 | Model-based joint visualization of multiple compositional omics datasets | Hawinkel, Stijn; BIJNENS, Luc; Le Cao, Kim-Anh; THAS, Olivier | Journal Contribution | A1 |
| 5 | 2020 | High dimensional surrogacy: computational aspects of an upscaled analysis | SENGUPTA, Rudradev; PERUALILA, Nolen Joy; SHKEDY, Ziv; Biecek, Przemyslaw; MOLENBERGHS, Geert; BIJNENS, Luc | Journal Contribution | A1 |
| 6 | 2019 | A unified framework for unconstrained and constrained ordination of microbiome read count data | Hawinkel, Stijn; Kerckhof, Frederiek-Maarten; BIJNENS, Luc; THAS, Olivier | Journal Contribution | A1 |
| 7 | 2019 | A broken promise: microbiome differential abundance methods do not control the false discovery rate | Hawinkel, Stijn; Mattiello, Federico; BIJNENS, Luc; THAS, Olivier | Journal Contribution | A1 |
| 8 | 2018 | Diffusion kurtosis imaging allows the early detection and longitudinal follow-up of amyloid-beta-induced pathology | Praet, Jelle; Manyakov, Nikolay V.; MUCHENE, Leacky; Mai, Zhenhua; Terzopoulos, Vasilis; de Backer, Steve; Torremans, An; Guns, Pieter-Jan; Van De Casteele, Tom; Bottelbergs, Astrid; Van Broeck, Bianca; Sijbers, Jan; Smeets, Dirk; SHKEDY, Ziv; BIJNENS, Luc; Pemberton, Darrel J.; Schmidt, Mark E.; Van der Linden, Annemie; Verhoye, Marleen | Journal Contribution | A1 |
| 9 | 2016 | High-Dimensional Biomarkers in Drug Discovery: The QSTAR Framework | PERUALILA, Nolen Joy; SHKEDY, Ziv; SENGUPTA, Rudradev; BIGIRUMURAME, Theophile; BIJNENS, Luc; Taloen, Willem; Verbist, Bie; Göhlmann, Hinrich W.H.; KASIM, Adetayo | Book Section | B2 |
| 10 | 2015 | Impact of selection bias on the evaluation of clusters of chemical compounds in the drug discovery process. | MILANZI, Elasma; ALONSO ABAD, Ariel; MOLENBERGHS, Geert; Buyck, Christophe; BIJNENS, Luc | Journal Contribution | A1 |
| 11 | 2015 | A new modeling approach for quantifying expert opinion in the drug discovery process | MILANZI, Elasma; ALONSO ABAD, Ariel; MOLENBERGHS, Geert; Buyck, Christophe; BIJNENS, Luc | Journal Contribution | A1 |
| 12 | 2015 | Translation of disease associated gene signatures across tissues | KASIM, Adetayo; SHKEDY, Ziv; LIN, Dan; VAN SANDEN, Suzy; CORTINAS ABRAHANTES, Jose; Goehlmann, Hinrich W. H.; BIJNENS, Luc; Yekutieli, Dani; Camilleri, Michael; Aerssens, Jeroen; TALLOEN, Willem | Journal Contribution | A1 |
| 13 | 2014 | Impact of selection bias on the evaluation of clusters of chemical compounds in the drug discovery process | ALONSO ABAD, Ariel; MILANZI, Elasma; MOLENBERGHS, Geert; Buyck, Christophe; BIJNENS, Luc | Working Paper | R2 |
| 14 | 2014 | A permutational-splitting sample procedure to quantify expert opinion on clusters of chemical compounds using high-dimensional data | MILANZI, Elasma; ALONSO ABAD, Ariel; Buyck, Christophe; MOLENBERGHS, Geert; BIJNENS, Luc | Journal Contribution | A1 |
| 15 | 2014 | Dose-Response Modeling Under Simple Order Restrictions Using Bayesian Variable Selection Methods | OTAVA, Martin; SHKEDY, Ziv; Lin, Dan; GOEHLMANN, Hinrich W.H.; BIJNENS, Luc; TALLOEN, Willem; KASIM, Adetayo | Journal Contribution | A1 |
| 16 | 2014 | Quality control of Platinum Spike dataset by probe-level mixed models | KHAMIAKOVA, Tatsiana; SHKEDY, Ziv; AMARATUNGA, Dhammika; TALLOEN, Willem; Gohlmann, Hinrich; BIJNENS, Luc; KASIM, Adetayo | Journal Contribution | A1 |
| 17 | 2013 | aBioMarVsuit: A Biomarker Validation Suit for predicting Survival using gene signature | THILAKARATHNE, Pushpike; SHKEDY, Ziv; OTAVA, Martin; TALLOEN, Willem; BIJNENS, Luc; KASIM, Adetayo | Journal Contribution | A1 |
| 18 | 2013 | Comparison of methods for the selection of genomic biomarkers | LIN, Dan; Tilahun, Abel; Abrahantes, Jose Cortinas; SHKEDY, Ziv; MOLENBERGHS, Geert; Gohlmann, Hinrich W. H.; TALLOEN, Willem; BIJNENS, Luc | Journal Contribution | A1 |
| 19 | 2012 | Modeling Dose-response Microarray Data in Early Drug Development Experiments Using R: Order Restricted Analysis of Microarray Data | LIN, Dan; SHKEDY, Ziv; Yekutieli, D.; AMARATUNGA, Dhammika; BIJNENS, Luc | Book | B1 |
| 20 | 2012 | Single Contrast Tests | Lin, Dan; SHKEDY, Ziv; Yekutieli, Daniel; BURZYKOWSKI, Tomasz; Göhlmann, Hinrich W.H.; De Bondt, An; Verbeke, Tobias; BIJNENS, Luc | Book Section | B2 |
| 21 | 2012 | Significance Analysis of Dose-response Microarray Data | LIN, Dan; SHKEDY, Ziv; Gohlmann, H..; De Bondt, An; BIJNENS, Luc; AMARATUNGA, Dhammika; TALLOEN, Willem | Book Section | B2 |
| 22 | 2012 | A Meta-Analytical Framework to Include Historical Data in Allometric Scaling | BIJNENS, Luc; Van Den Bergh, An; Sinha, Vikash; GEYS, Helena; MOLENBERGHS, Geert; Verbeke, Tobias; KASIM, Adetayo; STRAETEMANS, Roel; De Ridder, Filip; Balmain-Mackie, Claire | Journal Contribution | A1 |
| 23 | 2012 | GENOMIC BIOMARKERS FOR A BINARY CLINICAL OUTCOME IN EARLY DRUG DEVELOPMENT MICROARRAY EXPERIMENTS | VAN SANDEN, Suzy; SHKEDY, Ziv; BURZYKOWSKI, Tomasz; Gohlmann, Hinrich W. H.; TALLOEN, Willem; BIJNENS, Luc | Journal Contribution | A1 |
| 24 | 2010 | Correction for Model Selection Bias Using a Modified Model Averaging Approach for Supervised Learning Methods Applied to EEG Experiments | WOUTERS, Kristien; CORTINAS ABRAHANTES, Jose; MOLENBERGHS, Geert; GEYS, Helena; BIJNENS, Luc; Ahnaou, Abdellah; Drinkenburg, W.H.I.M. | Journal Contribution | A1 |
| 25 | 2010 | FABIA: factor analysis for bicluster acquisition | Hochreiter, Sepp; Bodenhofer, Ulrich; Heusel, Martin; Mayr, Andreas; Mitterecker, Andreas; KASIM, Adetayo; KHAMIAKOVA, Tatsiana; VAN SANDEN, Suzy; LIN, Dan; Talloen, Willem; BIJNENS, Luc; Gohlmann, Hinrich W. H.; SHKEDY, Ziv; Clevert, Djork-Arne | Journal Contribution | A1 |
| 26 | 2010 | Informative or Noninformative Calls for Gene Expression: A Latent Variable Approach | KASIM, Adetayo; LIN, Dan; VAN SANDEN, Suzy; Clevert, Djork-Arne; BIJNENS, Luc; Goehlmann, Hinrich; AMARATUNGA, Dhammika; Hochreiter, Sepp; SHKEDY, Ziv; TALLOEN, Willem | Journal Contribution | A1 |
| 27 | 2010 | Genomic Biomarkers for Depression: Feature-Specific and Joint Biomarkers | TILAHUN ESHETE, Abel; LIN, Dan; SHKEDY, Ziv; GEYS, Helena; ALONSO ABAD, Ariel; Peeters, Pieter; TALLOEN, Willem; Drinkenburg, Wilhelmus; Goehlmann, Hinrich; Gorden, Evian; BIJNENS, Luc; MOLENBERGHS, Geert | Journal Contribution | A1 |
| 28 | 2010 | A Latent Pharmacokinetic Time Profile to Model Dose-Response Survival Data | JACOBS, Tom; STRAETEMANS, Roel; MOLENBERGHS, Geert; Bouwknecht, Adriaan J.; BIJNENS, Luc | Journal Contribution | A1 |
| 29 | 2009 | Multiple contrast test for detecting monotonic dose-response relationship and FDR-adjusted confidence intervals for selected parameters in a microarray Setting | LIN, Dan; SHKEDY, Ziv; BURZYKOWSKI, Tomasz; Yekutieli, D.; De Bondt, A.; Göhlmann, WHH.; TALLOEN, Willem; BIJNENS, Luc | Journal Contribution | A1 |
| 30 | 2009 | Investigating Association Between Behavior, Corticosterone, Heart Rate, and Blood Pressure in Rats Using Surrogate Marker Evaluation Methodology | TILAHUN ESHETE, Abel; MARINGWA, John; GEYS, Helena; ALONSO ABAD, Ariel; Raeymaekers, Leen; MOLENBERGHS, Geert; Van Den Kieboom, Gerd; Drinkenburg, Pim; BIJNENS, Luc | Journal Contribution | A1 |
| 31 | 2009 | A Comparison of Procedures for Controlling the False Discovery Rate in the Presence of Small Variance Genes: A Simulation Study | LIN, Dan; SHKEDY, Ziv; BURZYKOWSKI, Tomasz; TALLOEN, Willem; BIJNENS, Luc | Journal Contribution | A1 |
| 32 | 2008 | A high-dimensional joint model for longitudinal outcomes of different nature | FAES, Christel; AERTS, Marc; MOLENBERGHS, Geert; GEYS, Helena; TEUNS, Greet; BIJNENS, Luc | Journal Contribution | A1 |
| 33 | 2008 | Application of Semiparametric Mixed Models and Simultaneous Confidence Bands in a Cardiovascular Safety Experiment with Longitudinal Data | MARINGWA, John; GEYS, Helena; SHKEDY, Ziv; FAES, Christel; MOLENBERGHS, Geert; AERTS, Marc; Van Ammel, Karel; Teisman, Ard; BIJNENS, Luc | Journal Contribution | A1 |
| 34 | 2008 | Combined Models for Data from In Vitro-In Vivo Correlation Experiments | JACOBS, Tom; Rossenu, Stefaan; Dunne, Adrian; MOLENBERGHS, Geert; STRAETEMANS, Roel; BIJNENS, Luc | Journal Contribution | A1 |
| 35 | 2008 | Including information on the therapeutic window in bioequivalence acceptance | JACOBS, Tom; De Ridder, Filip; Rusch, Sarah; Van Peer, Achiel; MOLENBERGHS, Geert; BIJNENS, Luc | Journal Contribution | A1 |
| 36 | 2008 | Information theory based marker evaluation | LIN, Dan; SHKEDY, Ziv; BURZYKOWSKI, Tomasz; AERTS, Marc; Göhlmann, H.W.H.; De Bondt, A.; Perera, T.; Geerts, T.; Van den Wyngaert, I.; BIJNENS, Luc | Proceedings Paper | C2 |
| 37 | 2008 | Analysis of cross-over designs with serial correlation within periods using semi-parametric mixed models | MARINGWA, John; Geys, Helena; SHKEDY, Ziv; FAES, Christel; MOLENBERGHS, Geert; AERTS, Marc; Van Ammel, Karel; Teisman, Ard; BIJNENS, Luc | Journal Contribution | A1 |
| 38 | 2008 | A Comparison of Doubly Hierarchical Discriminant Analyses for Multiple Class Longitudinal Data from EEG Experiments | WOUTERS, Kristien; CORTINAS ABRAHANTES, Jose; MOLENBERGHS, Geert; Ahnaou, Abdellah; Drinkenburg, W.H.I.M.; BIJNENS, Luc | Journal Contribution | A1 |
| 39 | 2008 | An Investigation on Performance of Significance Analysis of Microarray (SAM) for the Comparisons of Several Treatments with one Control in the Presence of Small-variance Genes | LIN, Dan; SHKEDY, Ziv; BURZYKOWSKI, Tomasz; Ion, R.; Goehlmann, H.W.H.; De Bondt, A.; Perera, T.; Geerts, T.; Van den Wyngaert, I.; BIJNENS, Luc | Proceedings Paper | C1 |
| 40 | 2008 | A new convolution-based approach to develop a level in-vitro-in-vivo correlation (IVIVC) for an extended-release oral dosage form | JACOBS, Tom; STRAETEMANS, Roel; Rossenu, Stefaan; Dunne, A.; MOLENBERGHS, Geert; BIJNENS, Luc | Proceedings Paper | C2 |
| 41 | 2007 | Psychotropic drug classification based on sleep-wake behaviour of rats | WOUTERS, Kristien; Ahnaou, Abdellah; CORTINAS ABRAHANTES, Jose; MOLENBERGHS, Geert; GEYS, Helena; BIJNENS, Luc; Drinkenburg, Wilhelmus H. I. M. | Journal Contribution | A1 |
| 42 | 2007 | On the use of historical control data in pre-clinical safety studies | MARINGWA, John; FAES, Christel; AERTS, Marc; GEYS, Helena; TEUNS, Greet; Van Den Poel, B.; BIJNENS, Luc | Journal Contribution | A1 |
| 43 | 2007 | Testing for trends in dose-response microarray experiments: A comparison of several testing procedures, multiplicity and resampling-based inference | LIN, Dan; SHKEDY, Ziv; Yekutieli, Dani; BURZYKOWSKI, Tomasz; Goehlmann, Hinrich W. H.; De Bondt, An; Perera, Tim; Geerts, Tamara; BIJNENS, Luc | Journal Contribution | A1 |
| 44 | 2006 | GLMM approach to study the spatial and temporal evolution of spikes in the small intestine | FAES, Christel; AERTS, Marc; GEYS, Helena; BIJNENS, Luc; Donck, LV; Lammers, WJEP | Journal Contribution | A1 |
| 45 | 2006 | A modeling approach to the analysis of nerve regenerative experiments | VAN SANDEN, Suzy; Wouters, Luc; BURZYKOWSKI, Tomasz; MOLENBERGHS, Geert; Van Remoortere, Marie; MEERT, Theo; BIJNENS, Luc | Journal Contribution | A1 |
| 46 | 2006 | Teaching statistical thinking to life scientists a case-based approach | VANDENBROECK, Peter; Wouters, Luc; MOLENBERGHS, Geert; Van Gestel, Evy; BIJNENS, Luc | Journal Contribution | A1 |
| 47 | 2005 | Behavioral testing of antidepressant compounds: An analysis of crossover design for correlated binary data | SHKEDY, Ziv; VANDERSMISSEN, Veerle; MOLENBERGHS, Geert; Van Craenendonck, H; Aerts, Nancy; Steckler, T; BIJNENS, Luc | Journal Contribution | A1 |
| 48 | 2005 | Design and analysis of drug combination experiments | STRAETEMANS, Roel; O'BRIEN, Timothy; WOUTERS, Luc; Van Dun, J; Janicot, M; BIJNENS, Luc; BURZYKOWSKI, Tomasz; AERTS, Marc | Journal Contribution | A1 |
| 49 | 2005 | Modeling anti-KLH ELISA data using two-stage and mixed effects models in support of immunotoxicological studies | SHKEDY, Ziv; STRAETEMANS, Roel; MOLENBERGHS, Geert; Desmidt, Miek; Vinken, Petra; Goeminne, Nick; Coussement, Werner; Van den Poel, Bob; BIJNENS, Luc | Journal Contribution | A1 |
| 50 | 2005 | A hierarchical binomial-poisson model for the analysis of a crossover design for correlated binary data when the number of trials is dose-dependent | SHKEDY, Ziv; MOLENBERGHS, Geert; Van Craenendonck, Hansfried; BIJNENS, Luc; Steckler, Thomas | Journal Contribution | A1 |
| 51 | 2005 | Use of principal component analysis and the GE-biplot for the graphical exploration of gene expression data - Reply | Gohlmann, Hinrich W.; Kass, Stefan U.; Lewi, Paul J.; BIJNENS, Luc; Wouters, Luc; MOLENBERGHS, Geert | Journal Contribution | A1 |
| 52 | 2004 | Spectral map-analysis: a method to analyze gene expression data | BIJNENS, Luc; Lewi, Paul J.; Göhlmann, Hinrich W.; MOLENBERGHS, Geert; Wouters, Luc | Proceedings Paper | C2 |
| 53 | 2004 | Spatial determination of successive spikes in the isolated cat duodenum | Lammers, WJEP; FAES, Christel; Stephen, B; BIJNENS, Luc; Ver Donck, LV; Schuurkes, JAJ | Journal Contribution | A1 |
| 54 | 2003 | Validation of biomarkers as surrogates for clinical endpoints | BUYSE, Marc; VANGENEUGDEN, Tony; BIJNENS, Luc; RENARD, Didier; BURZYKOWSKI, Tomasz; GEYS, Helena; MOLENBERGHS, Geert | Book Section | B3 |
| 55 | 2003 | Graphical exploration of gene expression data: a comparative study of three multivariate methods | Wouters, Luc; Gohlmann, Hinrich W.; BIJNENS, Luc; Kass, Stefan U.; MOLENBERGHS, Geert; Lewi, Paul J. | Journal Contribution | A1 |
| 56 | 2003 | Validation of a longitudinally measured surrogate for a time-to-event endpoint | RENARD, Didier; GEYS, Helena; MOLENBERGHS, Geert; BURZYKOWSKI, Tomasz; BUYSE, Marc; VANGENEUGDEN, Tony; BIJNENS, Luc | Journal Contribution | A1 |
| 57 | 2002 | Selection models and pattern-mixture models to analyze longitudinal quality of life data subject to dropout | MICHIELS, Bart; MOLENBERGHS, Geert; BIJNENS, Luc; VANGENEUGDEN, Tony; THIJS, Herbert | Journal Contribution | A1 |
| 58 | 1997 | Linear Mixed Models and Missing Data | MOLENBERGHS, Geert; BIJNENS, Luc; Shaw, David | Book Section | |
| 59 | 1996 | A combined analysis of European Organization for Research and Treatment of Cancer and Medical Research Council randomized clinical trials for the prophylactic treatment of stage TaT1 bladder cancer | Pawinski, R.; SYLVESTER, Richard; Kurth, K.; Bouffioux, Christophe; van der Meijden, A.; Parmar, M.; BIJNENS, Luc | Journal Contribution | |
| 60 | 1996 | Can the forest plot be simplified without loosing relevant information in meta-analyses? | BIJNENS, Luc; SYLVESTER, Richard; Collette, L.; Ivanov, A.; Hoctin, Boes G. | Journal Contribution | |
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