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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 70 | 2015 | A comparative study between spiral-filter press and belt press implemented in a cloudy apple juice production process | De Paepe, Domien; Coudijzer, Katleen; Noten, Bart; VALKENBORG, Dirk; Servaes, Kelly; De Loose, Marc; Diels, Ludo; Voorspoels, Stefan; Van Droogenbroeck, Bart | Journal Contribution | A1 |
| 71 | 2015 | Pilot-scale production of cloudy juice from low-quality pear fruit under low-oxygen conditions | De Paepe, Domien; Coudijzer, Katleen; Noten, Bart; VALKENBORG, Dirk; Servaes, Kelly; De Loose, Marc; Diels, Ludo; Voorspoels, Stefan; Van Droogenbroeck, Bart | Journal Contribution | A1 |
| 72 | 2015 | Proteomics applications in Caenorhabditis elegans research | Husson, Steven J.; Moyson, Sofie; VALKENBORG, Dirk; Baggerman, Geert; Mertens, Inge | Journal Contribution | A1 |
| 73 | 2015 | An effective plasma membrane proteomics approach for small tissue samples | Smolders, Katrien; Lombaert, Nathalie; VALKENBORG, Dirk; Baggerman, Geert; Arckens, Lutgarde | Journal Contribution | A1 |
| 74 | 2015 | A generic approach for "shotgun" analysis of the soluble proteome of plant cell suspension cultures | De Vijlder, Thomas; VALKENBORG, Dirk; Dewaele, Debbie; Remmerie, Noor; Laukens, Kris; Witters, Erwin | Journal Contribution | A1 |
| 75 | 2015 | Protein complex analysis: From raw protein lists to protein interaction networks | Meysman, Pieter; Titeca, Kevin; Eyckerman, Sven; Tavernier, Jan; GOETHALS, Bart; Martens, Lennart; VALKENBORG, Dirk; Laukens, Kris | Journal Contribution | A1 |
| 76 | 2015 | Determination of Variation Parameters as a Crucial Step in Designing TMT-Based Clinical Proteomics Experiments | Maes, Evelyne; VALKENBORG, Dirk; Baggerman, Geert; Willems, Hanny; Landuyt, Bart; Schoofs, Liliane; Mertens, Inge | Journal Contribution | A1 |
| 77 | 2015 | On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry | Dittwald, Piotr; VALKENBORG, Dirk; CLAESEN, Jurgen; Rockwood, Alan; Gambin, Anna | Journal Contribution | A1 |
| 78 | 2015 | Differences in the Elemental Isotope Definition May Lead to Errors in Modern Mass-Spectrometry-Based Proteomics | CLAESEN, Jurgen; Lermyte, Frederik; Sobott, Frank; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Journal Contribution | A1 |
| 79 | 2015 | iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring | Bittremieux, Wout; Willems, Hanny; Kelchtermans, Pieter; Martens, Lennart; Laukens, Kris; VALKENBORG, Dirk | Journal Contribution | A1 |
| 80 | 2015 | Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files | Kelchtermans, Pieter; Silva, Ana S. C.; Argentini, Andrea; Staes, An; Vandenbussche, Jonathan; Laukens, Kris; VALKENBORG, Dirk; Martens, Lennart | Journal Contribution | A1 |
| 81 | 2015 | Variability of the phenolic profiles in the fruits from old, recent and new apple cultivars cultivated in Belgium | De Paepe, Domien; VALKENBORG, Dirk; Noten, Bart; Servaes, Kelly; Diels, Ludo; De Loose, Marc; Van Droogenbroeck, Bart; Voorspoels, Stefan | Journal Contribution | A1 |
| 82 | 2015 | Characterization of top-down ETD in a travelling-wave ion guide | Lermyte, Frederik; Verschueren, Tim; Brown, Jeffery M.; Williams, Jonathan P.; VALKENBORG, Dirk; Sobott, Frank | Journal Contribution | A1 |
| 83 | 2014 | Towards automated discrimination of lipids versus peptides from full scan mass spectra | Dittwald, Piotr; Nghia, Vu Trung; Harris, Glenn A.; Caprioli, Richard .M.; Van de Plas, Raf; Laukens, Kris; Gambin, Anna; VALKENBORG, Dirk | Journal Contribution | A1 |
| 84 | 2014 | jqcML: An Open-Source Java API for Mass Spectrometry Quality Control Data in the qcML Format | Bittremieux, Wout; Kelchtermans, Pieter; VALKENBORG, Dirk; Martens, Lennart; Laukens, Kris | Journal Contribution | A1 |
| 85 | 2014 | Unravelling associations between unassigned mass spectrometry peaks with frequent itemset mining techniques | Trung Nghia, Vu; Mrzic, Aida; VALKENBORG, Dirk; Maes, Evelyne; Lemiere, Filip; GOETHALS, Bart; Laukens, Kris | Journal Contribution | A1 |
| 86 | 2014 | qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments | Walzer, Mathias; Pernas, Lucia Espona; Nasso, Sara; Bittremieux, Wout; Nahnsen, Sven; Kelchtermans, Pieter; Pichler, Peter; van den Toorn, Henk W. P.; Staes, An; Vandenbussche, Jonathan; Mazanek, Michael; Taus, Thomas; Scheltema, Richard A.; Kelstrup, Christian D.; Gatto, Laurent; van Breukelen, Bas; Aiche, Stephan; VALKENBORG, Dirk; Laukens, Kris; Lilley, Kathryn S.; Olsen, Jesper V.; Heck, Albert J. R.; Mechtler, Karl; Aebersold, Ruedi; Gevaert, Kris; Vizcaino, Juan Antonio; Hermjakob, Henning; Kohlbacher, Oliver; Martens, Lennart | Journal Contribution | A1 |
| 87 | 2014 | Efficient Reduction of Candidate Matches in Peptide Spectrum Library Searching Using the Top k Most Intense Peaks | Trung Nghia, Vu; Bittremieux, Wout; VALKENBORG, Dirk; GOETHALS, Bart; Lemiere, Filip; Laukens, Kris | Journal Contribution | A1 |
| 88 | 2014 | ETD Allows for Native Surface Mapping of a 150 kDa Noncovalent Complex on a Commercial Q-TWIMS-TOF Instrument | Lermyte, Frederik; Konijnenberg, Albert; Williams, Jonathan P.; Brown, Jeffery M.; VALKENBORG, Dirk; Sobott, Frank | Journal Contribution | A1 |
| 89 | 2014 | Comparison of the Mahalanobis Distance and Pearson's χ(2) Statistic as Measures of Similarity of Isotope Patterns. | ZAMANZAD GHAVIDEL, Fatemeh; CLAESEN, Jurgen; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Journal Contribution | A1 |
| 90 | 2014 | Thermal degradation of cloudy apple juice phenolic constituents | De Paepe, D.; VALKENBORG, Dirk; Coudijzer, K.; Noten, B.; Servaes, K.; De Loose, M.; Voorspoels, S.; Diels, L.; Van Droogenbroeck, B. | Journal Contribution | A1 |
| 91 | 2014 | Machine learning applications in proteomics research: How the past can boost the future | Kelchtermans, Pieter; Bittremieux, Wout; De Grave, Kurt; Degroeve, Sven; Ramon, Jan; Laukens, Kris; VALKENBORG, Dirk; Barsnes, Harald; Martens, Lennart | Journal Contribution | A1 |
| 92 | 2014 | Colorectal cancer biomarker discovery and validation using LC-MS/MS-based proteomics in blood: truth or dare? | Reumer, Ank; Maes, Evelyne; Mertens, Inge; Cho, William C. S.; Landuyt, Bart; VALKENBORG, Dirk; Schoofs, Liliane; Baggerman, Geert | Journal Contribution | A1 |
| 93 | 2014 | BRAIN 2.0: Time and Memory Complexity Improvements in the Algorithm for Calculating the Isotope Distribution | Dittwald, Piotr; VALKENBORG, Dirk | Journal Contribution | A1 |
| 94 | 2014 | The use of the isotopic distribution as a complementary quality metric to assess tandem mass spectra results | ZAMANZAD GHAVIDEL, Fatemeh; Mertens, Inge; Baggerman, Geert; Laukens, Kris; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Journal Contribution | A1 |
| 95 | 2014 | Characterization of the peripheral blood transcriptome in a repeated measures design using a panel of healthy individuals | DE BOEVER, Patrick; Wens, Britt; Forcheh, Anyiawung Chiara; Reynders, Hans; Nelen, Vera; KLEINJANS, J.; Van Larebeke, Nicolas; VERBEKE, Geert; VALKENBORG, Dirk; Schoeters, Greet | Journal Contribution | A1 |
| 96 | 2013 | Evaluation of normalization methods to pave the way towards large-scale LC-MS-based metabolomic profiling experiments | EJIGU, Bedilu; VALKENBORG, Dirk; Baggerman, Geert; Vanaerschot, Manu; Witters, Erwin; Dujardin, Jean-Claude; BURZYKOWSKI, Tomasz; Berg, Maya | Journal Contribution | A1 |
| 97 | 2013 | Proteomic analysis of formalin-fixed paraffin-embedded colorectal cancer tissue using tandem mass tag protein labeling | Maes, Evelyne; VALKENBORG, Dirk; Mertens, Inge; Broeckx, Valerie; Baggerman, Geert; Sagaert, Xavier; Landuyt, Bart; Prenen, Hans; Schoofs, Liliane | Journal Contribution | A1 |
| 98 | 2013 | Comment on "Computation of Isotopic Peak Center-Mass Distribution by Fourier Transform" | Hu, Han; Dittwald, Piotr; Zaia, Joseph; VALKENBORG, Dirk | Journal Contribution | A1 |
| 99 | 2013 | BRAIN: A Universal Tool for High-Throughput Calculations of the Isotopic Distribution for Mass Spectrometry | Dittwald, Piotr; CLAESEN, Jurgen; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk; Gambin, Anna | Journal Contribution | A1 |
| 100 | 2013 | Proteomic and metabolomic responses to connexin43 silencing in primary hepatocyte cultures | Vinken, Mathieu; Maes, Michael; Cavill, Rachel; VALKENBORG, Dirk; Ellis, James K.; Decrock, Elke; LEYBAERT, Luc; Staes, An; Gevaert, Kris; Oliveira, Andre G.; Menezes, Gustavo B.; Cogliati, Bruno; Zaidan Dagli, Maria Lucia; Ebbels, Timothy M. D.; Witters, Erwin; Keun, Hector C.; Vanhaecke, Tamara; Rogiers, Vera | Journal Contribution | A1 |
| 101 | 2012 | Normalization of large-scale mass spectrometry-based metabolic profiling experiments | EJIGU, Bedilu; VALKENBORG, Dirk; Berg, Maya; Dujardin, Jean-Claude; BURZYKOWSKI, Tomasz | Conference Material | C2 |
| 102 | 2012 | Reply to the Comment on: "An efficient method to calculate the aggregated isotopic distribution and exact center-masses" | CLAESEN, Jurgen; Dittwald, Piotr; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Journal Contribution | M |
| 103 | 2012 | The isotopic distribution conundrum | VALKENBORG, Dirk; Mertens, Inge; Lemiere, Filip; Witters, Erwin; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 104 | 2012 | An Efficient Method to Calculate the Aggregated Isotopic Distribution and Exact Center-Masses | CLAESEN, Jurgen; Dittwald, Piotr; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Journal Contribution | A1 |
| 105 | 2011 | A Bayesian model-averaging approach to the quantification of overlapping peptides in an MALDI-TOF mass spectrum. | ZHU, Qi; KASIM, Adetayo; VALKENBORG, Dirk; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 106 | 2011 | Next generation functional proteomics in non-model plants: A survey on techniques and applications for the analysis of protein complexes and post-translational modifications | Remmerie, Noor; De Vijlder, Thomas; Laukens, Kris; Thanh Hai Dang; Lemiere, Filip; Mertens, Inge; VALKENBORG, Dirk; Blust, Ronny; Witters, Erwin | Journal Contribution | A1 |
| 107 | 2011 | An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data | Vu, Trung N.; VALKENBORG, Dirk; SMETS, Koen; Verwaest, Kim A.; Dommisse, Roger; Lemiere, Filip; Verschoren, Alain; GOETHALS, Bart; Laukens, Kris | Journal Contribution | A1 |
| 108 | 2011 | Unraveling tobacco BY-2 protein complexes with BN PAGE/LC-MS/MS and clustering methods | Remmerie, Noor; De Vijlder, Thomas; VALKENBORG, Dirk; Laukens, Kris; SMETS, Koen; Vreeken, Jilles; Mertens, Inge; Carpentier, Sebastien C.; Panis, Bart; De Jaeger, Geert; Blust, Ronny; Prinsen, Els; Witters, Erwin | Journal Contribution | A1 |
| 109 | 2011 | A Markov-Chain Model for the Analysis of High-Resolution Enzymatically O-18-Labeled Mass Spectra | VALKENBORG, Dirk; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 110 | 2010 | Markov-Chain-Based Heteroscedastic Regression Model for the Analysis of High-Resolution Enzymatically O-18-Labeled Mass Spectra | ZHU, Qi; VALKENBORG, Dirk; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 111 | 2009 | A strategy for the prior processing of high-resolution mass spectral data obtained from high-dimensional combined fractional diagonal chromatography | VALKENBORG, Dirk; Thomas, Gregoire; Krols, Luc; Kas, Koen; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 112 | 2008 | Processing of high-resolution MALDI-TOF mass spectometry data by using an average isotopic distribution | BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Proceedings Paper | C1 |
| 113 | 2008 | A model-based method for the prediction of the isotopic distribution of peptides | VALKENBORG, Dirk; JANSEN, Ivy; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 114 | 2008 | A Cross-Validation Study to Select a Classification Procedure for Clinical Diagnosis Based on Proteomic Mass Spectrometry | VALKENBORG, Dirk; VAN SANDEN, Suzy; LIN, Dan; KASIM, Adetayo; JANSEN, Ivy; SHKEDY, Ziv; BURZYKOWSKI, Tomasz; HALDERMANS, Philippe; ZHU, Qi | Journal Contribution | A1 |
| 115 | 2008 | Statistical Methods for the Analysis of High-resolution Mass Spectrometry Data | VALKENBORG, Dirk | Theses and Dissertations | T1 |
| 116 | 2007 | Using a Poisson approximation to predict the isotopic distribution of sulphur-containing peptides in a peptide-centric proteomic approach | VALKENBORG, Dirk; ASSAM NKOUIBERT, Pryseley; Thomas, Gregoire; Krols, Luc; Kas, Koen; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
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