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| | Issue Date | Title | Contributor(s) | Type | Cat. |
| 41 | 2020 | A “Refined Hydrogen Rule” and a “Refined Hydrogen and Halogen Rule” for Organic Molecules | CLAESEN, Jurgen; VALKENBORG, Dirk; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 42 | 2019 | The challenges of peptidomics in complementing proteomics in a clinical context | Maes, Evelyne; Oeyen, Eline; Boonen, Kurt; Schildermans, Karin; Mertens, Inge; Pauwels, Patrick; VALKENBORG, Dirk; Baggerman, Geert | Journal Contribution | A1 |
| 43 | 2019 | masstodon: A Tool for Assigning Peaks and Modeling Electron Transfer Reactions in Top-Down Mass Spectrometry | Lacki, Mateusz K.; Lermyte, Frederik; Miasojedow, Blazej; Startek, Michal P.; Sobott, Frank; VALKENBORG, Dirk; Gambin, Anna | Journal Contribution | A1 |
| 44 | 2019 | Beyond Genes: Re-Identifiability of Proteomic Data and Its Implications for Personalized Medicine | Boonen, Kurt; Hens, Kristien; Menschaert, Gerben; Baggerman, Geert; VALKENBORG, Dirk; Ertaylan, Gokhan | Journal Contribution | A1 |
| 45 | 2019 | Machine learning analysis of motor evoked potential time series to predict disability progression in multiple sclerosis | YPERMAN, Jan; BECKER, Thijs; VALKENBORG, Dirk; POPESCU, Veronica; HELLINGS, Niels; VAN WIJMEERSCH, Bart; PEETERS, Liesbet | Journal Contribution | M |
| 46 | 2019 | Deciphering morphology of Evoked Potentials | YPERMAN, Jan; BECKER, Thijs; VALKENBORG, Dirk; HELLINGS, Niels; Cambron, M.; Dive, D.; Laureys, G.; POPESCU, Veronica; VAN WIJMEERSCH, Bart; PEETERS, Liesbet | Journal Contribution | M |
| 47 | 2019 | QCQuan: a web tool for the automated assessment of protein expression and data quality of labeled mass spectrometry experiments. | VAN HOUTVEN, Joris; AGTEN, Annelies; Boonen, Kurt; Baggerman, Geert; HOOYBERGHS, Jef; Laukens, Kris; VALKENBORG, Dirk | Journal Contribution | A1 |
| 48 | 2019 | MIND: A Double-Linear Model To Accurately Determine Monoisotopic Precursor Mass in High-Resolution Top-Down Proteomics | Lermyte, Frederik; Dittwald, Piotr; CLAESEN, Jurgen; Baggerman, Geert; Sobott, Frank; O'Connor, Peter B.; Laukens, Kris; HOOYBERGHS, Jef; Gambin, Anna; VALKENBORG, Dirk | Journal Contribution | A1 |
| 49 | 2019 | De novo prediction of the elemental composition of peptides and proteins based on a single mass | CLAESEN, Jurgen; VALKENBORG, Dirk; BURZYKOWSKI, Tomasz | Journal Contribution | A1 |
| 50 | 2019 | Experimental design in quantitative proteomics | BURZYKOWSKI, Tomasz; CLAESEN, Jurgen; VALKENBORG, Dirk | Book Section | B2 |
| 51 | 2018 | Proceedings of the EuBIC developer's meeting 2018 | Willems, Sander; Bouyssie, David; Deforce, Dieter; Dorfer, Viktoria; Gorshkov, Vladimir; Kopczynski, Dominik; Laukens, Kris; Locard-Paulet, Marie; Schwammle, Veit; Uszkoreit, Julian; VALKENBORG, Dirk; Vaudel, Marc; Bittremieux, Wout | Journal Contribution | A1 |
| 52 | 2018 | A tutorial in small molecule identification via electrospray ionization-mass spectrometry: The practical art of structural elucidation | De Vijlder, Thomas; VALKENBORG, Dirk; Lemiere, Filip; Romijn, Edwin P.; Laukens, Kris; Cuyckens, Filip | Journal Contribution | A1 |
| 53 | 2018 | Radical solutions: Principles and application of electron-based dissociation in mass spectrometry-based analysis of protein structure | Lermyte, Frederik; VALKENBORG, Dirk; Loo, Joseph A.; Sobott, Frank | Journal Contribution | A1 |
| 54 | 2018 | Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry | CIACH, Michal; Lacki, Mateusz Krzysztof; Miasojedow, Blazej; Lermyte, Frederik; VALKENBORG, Dirk; Sobott, Frank; Gambin, Anna | Journal Contribution | A1 |
| 55 | 2018 | Quantitative Peptidomics with Isotopic and Isobaric Tags | Boonen, Kurt; De Haes, Wouter; VAN HOUTVEN, Joris; VERDONCK, Rik; Baggerman, Geert; VALKENBORG, Dirk; Schoofs, Liliane | Book Section | B2 |
| 56 | 2017 | Messar: Automated Recommendation Of Metabolite Substructures From Tandem Mass Spectra | Mrzic, Aida; Meysman, Pieter; De Vijlder, Thomas; Romijn, Edwin P; VALKENBORG, Dirk; Bittremieux, Wout; Laukens, Kris | Dataset | DS |
| 57 | 2017 | A Biocompatible Synthetic Lung Fluid Based on Human Respiratory Tract Lining Fluid Composition | Kumar, Abhinav; Terakosolphan, Wachirun; Hassoun, Mireille; Vandera, Kalliopi-Kelli; Novicky, Astrid; Harvey, Richard; Royall, Paul G.; Bicer, Elif Melis; Eriksson, Jonny; Edwards, Katarina; VALKENBORG, Dirk; Nelissen, Inge; Hassall, Dave; Mudway, Ian S.; Forbes, Ben | Journal Contribution | A1 |
| 58 | 2017 | Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry | Ciach, Michal Aleksander; Lacki, Mateusz Krzysztof; Miasojedow, Blazej; Lermyte, Frederik; VALKENBORG, Dirk; Sobott, Frank; Gambin, Anna | Proceedings Paper | C1 |
| 59 | 2017 | IsoSpec: Hyperfast Fine Structure Calculator | Lacki, Mateusz K.; Startek, Michal; VALKENBORG, Dirk; Gambin, Anna | Journal Contribution | A1 |
| 60 | 2017 | Conformational Space and Stability of ETD Charge Reduction Products of Ubiquitin | Lermyte, Frederik; Łącki, Mateusz Krzysztof; VALKENBORG, Dirk; Gambin, Anna; Sobott, Frank | Journal Contribution | A1 |
| 61 | 2017 | Computational quality control tools for mass spectrometry proteomics | Bittremieux, Wout; VALKENBORG, Dirk; Martens, Lennart; Laukens, Kris | Journal Contribution | A1 |
| 62 | 2017 | InSourcerer: a high-throughput method to search for unknown metabolite modifications by mass spectrometry | Mrzic, Aida; Lermyte, Frederik; Vu, Trung Nghia; VALKENBORG, Dirk; Laukens, Kris | Journal Contribution | A1 |
| 63 | 2017 | Thermodynamic framework to assess low abundance DNA mutation detection by hybridization | Willems, Hanny; Jacobs, An; Hadiwikarta, Wahyu Wijaya; Venken, Tom; VALKENBORG, Dirk; Van Roy, Nadine; Vandesompele, Jo; HOOYBERGHS, Jef | Journal Contribution | A1 |
| 64 | 2017 | The Analysis of Peptide-Centric Mass-Spectrometry Data Utilizing Information About the Expected Isotope Distribution | BURZYKOWSKI, Tomasz; CLAESEN, Jurgen; VALKENBORG, Dirk | Book Section | B2 |
| 65 | 2016 | Unsupervised Quality Assessment of Mass Spectrometry Proteomics Experiments by Multivariate Quality Control Metrics | Bittremieux, Wout; Meysman, Pieter; Martens, Lennart; VALKENBORG, Dirk; Laukens, Kris | Journal Contribution | A1 |
| 66 | 2016 | The use of elemental mass spectrometry in phosphoproteomic applications | Maes, Evelyne; Tirez, Kristof; Baggerman, Geert; VALKENBORG, Dirk; Schoofs, Liliane; Ruiz Encinar, Jorge; Mertens, Inge | Journal Contribution | A1 |
| 67 | 2016 | CONSTANd : a normalization method for isobaric labeled spectra by constrained optimization | Maes, Evelyne; Hadiwikarta, Wahyu Wijaya; Mertens, Inge; Baggerman, Geert; HOOYBERGHS, Jef; VALKENBORG, Dirk | Journal Contribution | A1 |
| 68 | 2016 | Designing biomedical proteomics experiments: state-of-the-art and future perspectives | Maes, Evelyne; Kelchtermans, Pieter; Bittremieux, Wout; De Grave, Kurt; Degroeve, Sven; HOOYBERGHS, Jef; Mertens, Inge; Baggerman, Geert; Ramon, Jan; Laukens, Kris; Martens, Lennart; VALKENBORG, Dirk | Journal Contribution | A1 |
| 69 | 2015 | Understanding reaction pathways in top-down ETD by dissecting isotope distributions: A mammoth task | Lermyte, Frederik; Lacki, Mateusz Krzysztof; VALKENBORG, Dirk; Baggerman, Geert; Gambin, Anna; Sobott, Frank | Journal Contribution | A1 |
| 70 | 2015 | A comparative study between spiral-filter press and belt press implemented in a cloudy apple juice production process | De Paepe, Domien; Coudijzer, Katleen; Noten, Bart; VALKENBORG, Dirk; Servaes, Kelly; De Loose, Marc; Diels, Ludo; Voorspoels, Stefan; Van Droogenbroeck, Bart | Journal Contribution | A1 |
| 71 | 2015 | Pilot-scale production of cloudy juice from low-quality pear fruit under low-oxygen conditions | De Paepe, Domien; Coudijzer, Katleen; Noten, Bart; VALKENBORG, Dirk; Servaes, Kelly; De Loose, Marc; Diels, Ludo; Voorspoels, Stefan; Van Droogenbroeck, Bart | Journal Contribution | A1 |
| 72 | 2015 | Proteomics applications in Caenorhabditis elegans research | Husson, Steven J.; Moyson, Sofie; VALKENBORG, Dirk; Baggerman, Geert; Mertens, Inge | Journal Contribution | A1 |
| 73 | 2015 | An effective plasma membrane proteomics approach for small tissue samples | Smolders, Katrien; Lombaert, Nathalie; VALKENBORG, Dirk; Baggerman, Geert; Arckens, Lutgarde | Journal Contribution | A1 |
| 74 | 2015 | A generic approach for "shotgun" analysis of the soluble proteome of plant cell suspension cultures | De Vijlder, Thomas; VALKENBORG, Dirk; Dewaele, Debbie; Remmerie, Noor; Laukens, Kris; Witters, Erwin | Journal Contribution | A1 |
| 75 | 2015 | Protein complex analysis: From raw protein lists to protein interaction networks | Meysman, Pieter; Titeca, Kevin; Eyckerman, Sven; Tavernier, Jan; GOETHALS, Bart; Martens, Lennart; VALKENBORG, Dirk; Laukens, Kris | Journal Contribution | A1 |
| 76 | 2015 | Determination of Variation Parameters as a Crucial Step in Designing TMT-Based Clinical Proteomics Experiments | Maes, Evelyne; VALKENBORG, Dirk; Baggerman, Geert; Willems, Hanny; Landuyt, Bart; Schoofs, Liliane; Mertens, Inge | Journal Contribution | A1 |
| 77 | 2015 | On the Fine Isotopic Distribution and Limits to Resolution in Mass Spectrometry | Dittwald, Piotr; VALKENBORG, Dirk; CLAESEN, Jurgen; Rockwood, Alan; Gambin, Anna | Journal Contribution | A1 |
| 78 | 2015 | Differences in the Elemental Isotope Definition May Lead to Errors in Modern Mass-Spectrometry-Based Proteomics | CLAESEN, Jurgen; Lermyte, Frederik; Sobott, Frank; BURZYKOWSKI, Tomasz; VALKENBORG, Dirk | Journal Contribution | A1 |
| 79 | 2015 | iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring | Bittremieux, Wout; Willems, Hanny; Kelchtermans, Pieter; Martens, Lennart; Laukens, Kris; VALKENBORG, Dirk | Journal Contribution | A1 |
| 80 | 2015 | Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files | Kelchtermans, Pieter; Silva, Ana S. C.; Argentini, Andrea; Staes, An; Vandenbussche, Jonathan; Laukens, Kris; VALKENBORG, Dirk; Martens, Lennart | Journal Contribution | A1 |
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